Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB0R87_RS06775 Genome accession   NZ_CP160224
Coordinates   1368455..1368916 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain JJ950     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363455..1373916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS06750 (AB0R87_06750) - 1364064..1364948 (+) 885 WP_106029794.1 cation diffusion facilitator family transporter -
  AB0R87_RS06755 (AB0R87_06755) - 1365010..1365162 (-) 153 WP_366597388.1 hypothetical protein -
  AB0R87_RS06760 (AB0R87_06760) - 1365464..1366003 (+) 540 WP_366597390.1 RDD family protein -
  AB0R87_RS06765 (AB0R87_06765) - 1366129..1367439 (+) 1311 WP_366597392.1 MFS transporter -
  AB0R87_RS06770 (AB0R87_06770) - 1367513..1368421 (+) 909 WP_366597394.1 chemotaxis protein -
  AB0R87_RS06775 (AB0R87_06775) kre 1368455..1368916 (-) 462 WP_012009774.1 YkyB family protein Regulator
  AB0R87_RS06780 (AB0R87_06780) - 1369284..1369508 (+) 225 WP_366597397.1 hypothetical protein -
  AB0R87_RS06785 (AB0R87_06785) - 1369532..1370281 (-) 750 WP_366597399.1 hypothetical protein -
  AB0R87_RS06790 (AB0R87_06790) - 1370356..1370574 (+) 219 WP_366597401.1 XtrA/YqaO family protein -
  AB0R87_RS06795 (AB0R87_06795) - 1370837..1371007 (+) 171 WP_366597403.1 hypothetical protein -
  AB0R87_RS06800 (AB0R87_06800) - 1370991..1371251 (+) 261 WP_366597405.1 ArpU family phage packaging/lysis transcriptional regulator -
  AB0R87_RS06805 (AB0R87_06805) - 1371336..1371554 (+) 219 WP_366597407.1 hypothetical protein -
  AB0R87_RS06810 (AB0R87_06810) - 1371741..1372526 (+) 786 WP_366597409.1 hypothetical protein -
  AB0R87_RS06815 (AB0R87_06815) - 1373080..1373736 (+) 657 WP_366597411.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=1019908 AB0R87_RS06775 WP_012009774.1 1368455..1368916(-) (kre) [Bacillus pumilus strain JJ950]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1019908 AB0R87_RS06775 WP_012009774.1 1368455..1368916(-) (kre) [Bacillus pumilus strain JJ950]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment