Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB0R87_RS04255 Genome accession   NZ_CP160224
Coordinates   891417..892208 (+) Length   263 a.a.
NCBI ID   WP_217012992.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 886417..897208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS04220 (AB0R87_04220) - 886500..887048 (+) 549 WP_350303773.1 thioredoxin family protein -
  AB0R87_RS04225 (AB0R87_04225) - 887385..887852 (+) 468 WP_050944749.1 thiol-disulfide oxidoreductase DCC family protein -
  AB0R87_RS04230 (AB0R87_04230) - 887889..889145 (-) 1257 WP_366597141.1 helix-turn-helix domain-containing protein -
  AB0R87_RS04235 (AB0R87_04235) - 889418..890005 (+) 588 WP_050944747.1 nitroreductase -
  AB0R87_RS04240 (AB0R87_04240) - 890046..890201 (-) 156 WP_003217852.1 YfhD family protein -
  AB0R87_RS04245 (AB0R87_04245) - 890263..890373 (-) 111 WP_017358836.1 YfhE family protein -
  AB0R87_RS04250 (AB0R87_04250) - 890426..891322 (-) 897 WP_350303775.1 TIGR01777 family oxidoreductase -
  AB0R87_RS04255 (AB0R87_04255) recX 891417..892208 (+) 792 WP_217012992.1 recombination regulator RecX Regulator
  AB0R87_RS04260 (AB0R87_04260) - 892212..892526 (+) 315 WP_310026908.1 YfhH family protein -
  AB0R87_RS04265 (AB0R87_04265) - 892549..892722 (-) 174 WP_003217811.1 YpzG family protein -
  AB0R87_RS04270 (AB0R87_04270) - 892748..892897 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  AB0R87_RS04275 (AB0R87_04275) - 893014..893286 (+) 273 WP_003217809.1 YfhJ family protein -
  AB0R87_RS04280 (AB0R87_04280) - 893576..894559 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30598.01 Da        Isoelectric Point: 6.8960

>NTDB_id=1019893 AB0R87_RS04255 WP_217012992.1 891417..892208(+) (recX) [Bacillus pumilus strain JJ950]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKQYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1019893 AB0R87_RS04255 WP_217012992.1 891417..892208(+) (recX) [Bacillus pumilus strain JJ950]
ATGCCCTATATTACAAAAATCTCTGCTCAGAAAAACAATACAGAGCGGGTAAACATCTTTCTTGATGAAAAATACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCAATACAAGTATGT
AAATGACCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGATTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAACGAAAAGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATACGACGGGTCATTTGAAAAGAAGATGAAG
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627

Multiple sequence alignment