Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R87_RS01990 Genome accession   NZ_CP160224
Coordinates   367241..367669 (-) Length   142 a.a.
NCBI ID   WP_003214307.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 362241..372669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS01960 (AB0R87_01960) - 362397..362726 (+) 330 WP_050943461.1 YckD family protein -
  AB0R87_RS01965 (AB0R87_01965) - 362776..363540 (-) 765 WP_340988787.1 MBL fold metallo-hydrolase -
  AB0R87_RS01970 (AB0R87_01970) - 363656..364072 (+) 417 WP_226804635.1 Lrp/AsnC family transcriptional regulator -
  AB0R87_RS01975 (AB0R87_01975) - 364102..364908 (+) 807 WP_137055254.1 aminoglycoside N(3)-acetyltransferase -
  AB0R87_RS01980 (AB0R87_01980) - 364910..365296 (-) 387 WP_335355841.1 competence protein ComJ -
  AB0R87_RS01985 (AB0R87_01985) - 365417..367114 (-) 1698 WP_366596889.1 methyl-accepting chemotaxis protein -
  AB0R87_RS01990 (AB0R87_01990) nucA/comI 367241..367669 (-) 429 WP_003214307.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R87_RS01995 (AB0R87_01995) - 368037..370106 (+) 2070 WP_366596891.1 hydantoinase/oxoprolinase family protein -
  AB0R87_RS02000 (AB0R87_02000) - 370096..372081 (+) 1986 WP_366596893.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5536

>NTDB_id=1019891 AB0R87_RS01990 WP_003214307.1 367241..367669(-) (nucA/comI) [Bacillus pumilus strain JJ950]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1019891 AB0R87_RS01990 WP_003214307.1 367241..367669(-) (nucA/comI) [Bacillus pumilus strain JJ950]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment