Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB0R87_RS00255 Genome accession   NZ_CP160224
Coordinates   47050..47340 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42050..52340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS00215 (AB0R87_00215) - 42085..42414 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  AB0R87_RS00220 (AB0R87_00220) - 42427..42867 (+) 441 WP_044140388.1 DUF327 family protein -
  AB0R87_RS00225 (AB0R87_00225) holB 42879..43868 (+) 990 WP_212046565.1 DNA polymerase III subunit delta' -
  AB0R87_RS00230 (AB0R87_00230) - 43871..44698 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  AB0R87_RS00235 (AB0R87_00235) yabA 44713..45066 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  AB0R87_RS00240 (AB0R87_00240) - 45122..45865 (+) 744 WP_366596757.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB0R87_RS00245 (AB0R87_00245) - 45852..46148 (+) 297 WP_366596759.1 GIY-YIG nuclease family protein -
  AB0R87_RS00250 (AB0R87_00250) rsmI 46126..47004 (+) 879 WP_366596761.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB0R87_RS00255 (AB0R87_00255) abrB 47050..47340 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB0R87_RS00260 (AB0R87_00260) metG 47861..49852 (+) 1992 WP_322000611.1 methionine--tRNA ligase -
  AB0R87_RS00265 (AB0R87_00265) - 49934..50701 (+) 768 WP_050945797.1 TatD family hydrolase -
  AB0R87_RS00270 (AB0R87_00270) - 50946..52148 (+) 1203 WP_106030286.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=1019888 AB0R87_RS00255 WP_087975202.1 47050..47340(-) (abrB) [Bacillus pumilus strain JJ950]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1019888 AB0R87_RS00255 WP_087975202.1 47050..47340(-) (abrB) [Bacillus pumilus strain JJ950]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGTATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATTCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment