Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL39_RS08855 Genome accession   NZ_LS483353
Coordinates   1730272..1730985 (-) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725272..1735985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS08820 (NCTC4001_01745) - 1725475..1725984 (+) 510 WP_038433763.1 GNAT family N-acetyltransferase -
  DQL39_RS08825 (NCTC4001_01746) nrdG 1725984..1726598 (+) 615 WP_038433764.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL39_RS08830 (NCTC4001_01747) yaaA 1726772..1727503 (-) 732 WP_011889219.1 peroxide stress protein YaaA -
  DQL39_RS08835 (NCTC4001_01748) - 1727545..1728402 (-) 858 WP_038433765.1 VOC family protein -
  DQL39_RS08840 (NCTC4001_01749) - 1728588..1728907 (+) 320 Protein_1659 winged helix-turn-helix transcriptional regulator -
  DQL39_RS08845 (NCTC4001_01750) - 1728958..1729959 (-) 1002 WP_111718110.1 IS30-like element IS1239 family transposase -
  DQL39_RS08855 (NCTC4001_01751) treR 1730272..1730985 (-) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQL39_RS08860 (NCTC4001_01752) treP 1731196..1733220 (+) 2025 WP_038433766.1 PTS system trehalose-specific EIIBC component -
  DQL39_RS08865 (NCTC4001_01753) treC 1733287..1734915 (+) 1629 WP_038433767.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1019828 DQL39_RS08855 WP_002982243.1 1730272..1730985(-) (treR) [Streptococcus pyogenes strain NCTC4001]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1019828 DQL39_RS08855 WP_002982243.1 1730272..1730985(-) (treR) [Streptococcus pyogenes strain NCTC4001]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTTTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment