Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB0R82_RS12110 Genome accession   NZ_CP160220
Coordinates   2377725..2378528 (-) Length   267 a.a.
NCBI ID   WP_128441713.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2372725..2383528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS12085 (AB0R82_12085) glpQB 2373862..2374593 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  AB0R82_RS12090 (AB0R82_12090) yqiI 2374672..2375292 (-) 621 WP_198878642.1 N-acetylmuramoyl-L-alanine amidase -
  AB0R82_RS12095 (AB0R82_12095) - 2375312..2375608 (-) 297 WP_014480225.1 hypothetical protein -
  AB0R82_RS12100 (AB0R82_12100) - 2375916..2376068 (+) 153 WP_014480226.1 hypothetical protein -
  AB0R82_RS12105 (AB0R82_12105) yqiG 2376141..2377259 (+) 1119 WP_198878641.1 NADH-dependent flavin oxidoreductase -
  AB0R82_RS12110 (AB0R82_12110) spo0A 2377725..2378528 (-) 804 WP_128441713.1 sporulation transcription factor Spo0A Regulator
  AB0R82_RS12115 (AB0R82_12115) spoIVB 2378804..2380084 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  AB0R82_RS12120 (AB0R82_12120) recN 2380259..2381989 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  AB0R82_RS12125 (AB0R82_12125) argR 2382026..2382475 (-) 450 WP_003230265.1 arginine repressor ArgR -
  AB0R82_RS12130 (AB0R82_12130) yqxC 2382573..2383418 (-) 846 WP_128441715.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29718.21 Da        Isoelectric Point: 6.3913

>NTDB_id=1019693 AB0R82_RS12110 WP_128441713.1 2377725..2378528(-) (spo0A) [Bacillus subtilis strain JM553]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRNSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1019693 AB0R82_RS12110 WP_128441713.1 2377725..2378528(-) (spo0A) [Bacillus subtilis strain JM553]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAACAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTTCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment