Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB0R82_RS11120 Genome accession   NZ_CP160220
Coordinates   2200433..2201053 (+) Length   206 a.a.
NCBI ID   WP_088467249.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195433..2206053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS11080 (AB0R82_11080) ptsA 2196564..2197070 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  AB0R82_RS11085 (AB0R82_11085) ypqA 2197208..2197627 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  AB0R82_RS11090 (AB0R82_11090) sppG 2197648..2198025 (-) 378 WP_014477159.1 YppG family protein -
  AB0R82_RS11095 (AB0R82_11095) yppF 2198213..2198401 (+) 189 WP_003230690.1 YppF family protein -
  AB0R82_RS11100 (AB0R82_11100) yppE 2198440..2198811 (-) 372 WP_015714151.1 YppE family protein -
  AB0R82_RS11105 (AB0R82_11105) yppD 2198857..2199102 (-) 246 WP_015251831.1 YppD family protein -
  AB0R82_RS11110 (AB0R82_11110) sspM 2199301..2199405 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB0R82_RS11115 (AB0R82_11115) yppC 2199430..2200392 (-) 963 WP_198878669.1 DUF2515 domain-containing protein -
  AB0R82_RS11120 (AB0R82_11120) recU 2200433..2201053 (+) 621 WP_088467249.1 Holliday junction resolvase RecU Machinery gene
  AB0R82_RS11125 (AB0R82_11125) ponA 2201075..2203825 (+) 2751 WP_198878668.1 transglycosylase domain-containing protein -
  AB0R82_RS11130 (AB0R82_11130) ypoC 2203901..2204395 (-) 495 WP_029726783.1 YpoC family protein -
  AB0R82_RS11135 (AB0R82_11135) nth 2204392..2205051 (-) 660 WP_009967580.1 endonuclease III -
  AB0R82_RS11140 (AB0R82_11140) dnaD 2205070..2205768 (-) 699 WP_198878667.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23986.11 Da        Isoelectric Point: 9.6240

>NTDB_id=1019692 AB0R82_RS11120 WP_088467249.1 2200433..2201053(+) (recU) [Bacillus subtilis strain JM553]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYINIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1019692 AB0R82_RS11120 WP_088467249.1 2200433..2201053(+) (recU) [Bacillus subtilis strain JM553]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAATATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment