Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   DQL37_RS05615 Genome accession   NZ_LS483352
Coordinates   1058470..1059258 (+) Length   262 a.a.
NCBI ID   WP_021340822.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12052     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1053470..1064258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL37_RS05550 (NCTC12052_01100) - 1053664..1053948 (-) 285 WP_011284877.1 hypothetical protein -
  DQL37_RS05555 (NCTC12052_01101) - 1053945..1054139 (-) 195 WP_002984315.1 hypothetical protein -
  DQL37_RS05560 (NCTC12052_01102) - 1054139..1054468 (-) 330 WP_011284878.1 hypothetical protein -
  DQL37_RS05565 (NCTC12052_01104) - 1054549..1054686 (-) 138 WP_011017881.1 hypothetical protein -
  DQL37_RS05570 (NCTC12052_01105) - 1054683..1054979 (-) 297 WP_011017882.1 MerR family transcriptional regulator -
  DQL37_RS05575 (NCTC12052_01106) - 1055058..1055243 (-) 186 WP_011054585.1 helix-turn-helix domain-containing protein -
  DQL37_RS05580 (NCTC12052_01107) - 1055410..1055649 (+) 240 WP_011284879.1 hypothetical protein -
  DQL37_RS05585 (NCTC12052_01108) - 1055799..1056008 (+) 210 WP_002984292.1 hypothetical protein -
  DQL37_RS05595 (NCTC12052_01110) - 1056224..1056463 (-) 240 WP_021340169.1 helix-turn-helix domain-containing protein -
  DQL37_RS05600 (NCTC12052_01111) - 1056537..1057019 (+) 483 WP_231907104.1 hypothetical protein -
  DQL37_RS09725 (NCTC12052_01112) - 1057016..1057162 (-) 147 WP_021340823.1 hypothetical protein -
  DQL37_RS05605 (NCTC12052_01113) - 1057219..1058004 (+) 786 WP_085577339.1 hypothetical protein -
  DQL37_RS05610 (NCTC12052_01115) - 1058138..1058296 (-) 159 WP_080465047.1 hypothetical protein -
  DQL37_RS05615 (NCTC12052_01116) irvR 1058470..1059258 (+) 789 WP_021340822.1 S24 family peptidase Regulator
  DQL37_RS05620 (NCTC12052_01117) - 1059268..1059573 (+) 306 WP_011106738.1 membrane protein -
  DQL37_RS05625 (NCTC12052_01118) - 1059693..1060781 (+) 1089 WP_023079773.1 site-specific integrase -
  DQL37_RS05630 (NCTC12052_01119) - 1061144..1061764 (+) 621 WP_002989605.1 DUF3862 domain-containing protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29992.22 Da        Isoelectric Point: 9.0535

>NTDB_id=1019692 DQL37_RS05615 WP_021340822.1 1058470..1059258(+) (irvR) [Streptococcus pyogenes strain NCTC12052]
MARGRGKLTPQDEEYKKIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNSLPNPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGIYAVEWDGQTYIKKVYREKGGLRLVSLNKKYNDKF
APFSEGPRIIGEIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1019692 DQL37_RS05615 WP_021340822.1 1058470..1059258(+) (irvR) [Streptococcus pyogenes strain NCTC12052]
ATGGCAAGAGGACGAGGGAAATTAACACCTCAAGACGAGGAATACAAAAAGATAATTTCTGCTAAAATTAACAGTTTATT
GCTAGAAAACAATTTAAAACAAGGACATTTAGCTGATGCATTGGAAATTCCACGAAGTAGTTTTAATGAATATGTCAAAG
GAAATTCCTTACCTAATCCTGGTAACGTTCAAAAGATAGCTGATTATTTCGGGTTAATGAAGTCTGATATAGATCCTAGA
TTTGCACCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTCGTCAAAAAAATAACCACAACAGTTGTAGA
ATTAAAGGTTCCTCGTAAACAAAAAGTTTTAGACTTTGCAACAGAACAATTGAAAGAGCAAAAAAACAAAATTACTTCGA
TAGAGAAAAAACTATATGAATACAAAGTCTATGAGAAACTTTCCGCAGGTACAGGTTATGGATATTTTGGTGATGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTAGATTACGATTTTGCCTCTTGGGTTTTTGGTGATTCTATGGAACCAACTTA
TCTGAATGGTGAGGTTGTGCTTATAAAACAAACTGGCTTTGATTATGAAGGTGGCATCTATGCCGTAGAGTGGGACGGAC
AAACCTATATTAAGAAAGTTTACAGAGAAAAGGGTGGCTTGCGCCTTGTGTCCTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCTCGTATAATAGGGGAAATTGTCGGTAACTTTATGCCTAAAGAGTACTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(168-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

38.158

100

0.443

Multiple sequence alignment