Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BAMY6614_RS14050 Genome accession   NZ_CP006960
Coordinates   2950198..2951688 (-) Length   496 a.a.
NCBI ID   WP_061862340.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2945198..2956688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS14020 (BAMY6614_14825) gudB 2945275..2946549 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  BAMY6614_RS14025 (BAMY6614_14830) - 2946710..2947294 (-) 585 WP_003153412.1 genetic competence negative regulator -
  BAMY6614_RS14030 (BAMY6614_14840) - 2947446..2948234 (-) 789 WP_029973639.1 metallophosphoesterase -
  BAMY6614_RS14035 (BAMY6614_14845) - 2948321..2948779 (-) 459 WP_007409443.1 YpbF family protein -
  BAMY6614_RS14040 (BAMY6614_14850) - 2948848..2949618 (-) 771 WP_061862339.1 LysM peptidoglycan-binding domain-containing protein -
  BAMY6614_RS14045 (BAMY6614_14855) - 2949596..2950183 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  BAMY6614_RS14050 (BAMY6614_14860) recS 2950198..2951688 (-) 1491 WP_061862340.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BAMY6614_RS14055 (BAMY6614_14865) - 2951681..2952739 (-) 1059 WP_061862341.1 helix-turn-helix domain-containing protein -
  BAMY6614_RS14060 (BAMY6614_14870) - 2953008..2953256 (+) 249 WP_003153403.1 ferredoxin -
  BAMY6614_RS14065 (BAMY6614_14875) - 2953392..2953964 (-) 573 WP_003153402.1 ECF transporter S component -
  BAMY6614_RS14070 (BAMY6614_14880) serA 2954454..2956031 (+) 1578 WP_017418054.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55967.08 Da        Isoelectric Point: 6.3777

>NTDB_id=101969 BAMY6614_RS14050 WP_061862340.1 2950198..2951688(-) (recS) [Bacillus amyloliquefaciens UMAF6614]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEAILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPVGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=101969 BAMY6614_RS14050 WP_061862340.1 2950198..2951688(-) (recS) [Bacillus amyloliquefaciens UMAF6614]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGG
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCCGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
CCTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCGGATAATG
CCGAGAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGTCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGACATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGGCGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGTGATACCGAGCTTCAGCAGCAGATTATTCAGAC
GGAAAGCCTGTCTGATTATGACCTGGAAGCCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGTAGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683

Multiple sequence alignment