Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB0R82_RS08715 Genome accession   NZ_CP160220
Coordinates   1665061..1665954 (+) Length   297 a.a.
NCBI ID   WP_198878774.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1660061..1670954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS08695 (AB0R82_08695) - 1660731..1662461 (+) 1731 WP_198878773.1 hypothetical protein -
  AB0R82_RS08700 (AB0R82_08700) ylqH 1662458..1662739 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AB0R82_RS08705 (AB0R82_08705) sucC 1662912..1664069 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0R82_RS08710 (AB0R82_08710) sucD 1664098..1665000 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AB0R82_RS08715 (AB0R82_08715) dprA 1665061..1665954 (+) 894 WP_198878774.1 DNA-processing protein DprA Machinery gene
  AB0R82_RS08720 (AB0R82_08720) topA 1666142..1668217 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  AB0R82_RS08725 (AB0R82_08725) trmFO 1668293..1669600 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R82_RS08730 (AB0R82_08730) xerC 1669668..1670582 (+) 915 WP_366592694.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32873.19 Da        Isoelectric Point: 9.9142

>NTDB_id=1019688 AB0R82_RS08715 WP_198878774.1 1665061..1665954(+) (dprA) [Bacillus subtilis strain JM553]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1019688 AB0R82_RS08715 WP_198878774.1 1665061..1665954(+) (dprA) [Bacillus subtilis strain JM553]
TTGGATCAGGCTGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGCGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment