Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB0R82_RS05715 Genome accession   NZ_CP160220
Coordinates   1099508..1100086 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094508..1105086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS05695 (AB0R82_05695) hemAT 1095019..1096317 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  AB0R82_RS05700 (AB0R82_05700) comW 1096456..1097985 (-) 1530 WP_204551443.1 FAD-dependent oxidoreductase -
  AB0R82_RS05705 (AB0R82_05705) yhxC 1098097..1098954 (+) 858 WP_160221474.1 SDR family oxidoreductase -
  AB0R82_RS05710 (AB0R82_05710) yhzC 1098982..1099215 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AB0R82_RS05715 (AB0R82_05715) comK 1099508..1100086 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  AB0R82_RS05720 (AB0R82_05720) yhxD 1100133..1101032 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  AB0R82_RS05725 (AB0R82_05725) yhjA 1101249..1101518 (+) 270 WP_160221475.1 excalibur calcium-binding domain-containing protein -
  AB0R82_RS05730 (AB0R82_05730) yhjB 1101561..1103030 (-) 1470 WP_122895185.1 sodium:solute symporter -
  AB0R82_RS05735 (AB0R82_05735) yhjC 1103027..1103227 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AB0R82_RS05740 (AB0R82_05740) - 1103426..1103797 (-) 372 WP_160221476.1 hypothetical protein -
  AB0R82_RS05745 (AB0R82_05745) yhjE 1103949..1104572 (+) 624 WP_010886465.1 VTT domain-containing protein -
  AB0R82_RS05750 (AB0R82_05750) lepB 1104574..1105080 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1019673 AB0R82_RS05715 WP_029317573.1 1099508..1100086(+) (comK) [Bacillus subtilis strain JM553]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1019673 AB0R82_RS05715 WP_029317573.1 1099508..1100086(+) (comK) [Bacillus subtilis strain JM553]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCACTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment