Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R82_RS01945 Genome accession   NZ_CP160220
Coordinates   361683..362132 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain JM553     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356683..367132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS01910 (AB0R82_01910) yckA 356958..357638 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  AB0R82_RS01915 (AB0R82_01915) yckB 357648..358511 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  AB0R82_RS01920 (AB0R82_01920) - 358673..358865 (+) 193 Protein_334 hypothetical protein -
  AB0R82_RS01925 (AB0R82_01925) - 358901..359221 (+) 321 Protein_335 RDD family protein -
  AB0R82_RS01930 (AB0R82_01930) yckD 359303..359635 (+) 333 WP_015252849.1 YckD family protein -
  AB0R82_RS01935 (AB0R82_01935) bglC 359788..361221 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  AB0R82_RS01940 (AB0R82_01940) nin/comJ 361258..361656 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  AB0R82_RS01945 (AB0R82_01945) nucA/comI 361683..362132 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  AB0R82_RS01950 (AB0R82_01950) tlpC 362300..364021 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  AB0R82_RS01955 (AB0R82_01955) hxlB 364132..364689 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  AB0R82_RS01960 (AB0R82_01960) hxlA 364695..365327 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  AB0R82_RS01965 (AB0R82_01965) hxlR 365560..365922 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=1019662 AB0R82_RS01945 WP_003234608.1 361683..362132(-) (nucA/comI) [Bacillus subtilis strain JM553]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1019662 AB0R82_RS01945 WP_003234608.1 361683..362132(-) (nucA/comI) [Bacillus subtilis strain JM553]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment