Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK31_RS07485 Genome accession   NZ_AP027679
Coordinates   1558773..1559402 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PSS-08-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553773..1564402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK31_RS07465 (VEE22_14340) ycbZ 1554174..1555934 (-) 1761 WP_113410459.1 Lon protease family protein -
  AABK31_RS07470 (VEE22_14350) matP 1556120..1556572 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK31_RS07475 (VEE22_14360) ompA 1556648..1557688 (-) 1041 WP_000750416.1 porin OmpA -
  AABK31_RS07480 (VEE22_14380) sulA 1558045..1558554 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK31_RS07485 (VEE22_14390) sxy/tfoX 1558773..1559402 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK31_RS07490 (VEE22_14400) yccS 1559365..1561527 (-) 2163 WP_338388723.1 YccS family putative transporter -
  AABK31_RS07495 (VEE22_14410) yccF 1561537..1561983 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AABK31_RS07500 (VEE22_14420) helD 1562106..1564160 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101966 AABK31_RS07485 WP_000839153.1 1558773..1559402(+) (sxy/tfoX) [Escherichia coli strain PSS-08-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101966 AABK31_RS07485 WP_000839153.1 1558773..1559402(+) (sxy/tfoX) [Escherichia coli strain PSS-08-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment