Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAMY6614_RS11975 Genome accession   NZ_CP006960
Coordinates   2434472..2434903 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429472..2439903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS11955 (BAMY6614_12595) spoVS 2430042..2430302 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BAMY6614_RS11960 (BAMY6614_12605) tdh 2430560..2431606 (+) 1047 WP_061862205.1 L-threonine 3-dehydrogenase -
  BAMY6614_RS11965 (BAMY6614_12610) - 2431619..2432797 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  BAMY6614_RS11970 (BAMY6614_12615) miaB 2432940..2434469 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAMY6614_RS11975 (BAMY6614_12620) ymcA 2434472..2434903 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMY6614_RS11980 (BAMY6614_12625) cotE 2435156..2435701 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAMY6614_RS11985 (BAMY6614_12630) hexA 2435820..2438405 (+) 2586 WP_038461807.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=101959 BAMY6614_RS11975 WP_003154113.1 2434472..2434903(+) (ymcA) [Bacillus amyloliquefaciens UMAF6614]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=101959 BAMY6614_RS11975 WP_003154113.1 2434472..2434903(+) (ymcA) [Bacillus amyloliquefaciens UMAF6614]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment