Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK03_RS14050 Genome accession   NZ_AP027676
Coordinates   2874217..2874846 (-) Length   209 a.a.
NCBI ID   WP_179150362.1    Uniprot ID   -
Organism   Escherichia coli strain PSS-08-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869217..2879846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK03_RS14035 (VEE18_27070) helD 2869459..2871513 (-) 2055 WP_001295354.1 DNA helicase IV -
  AABK03_RS14040 (VEE18_27080) yccF 2871636..2872082 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK03_RS14045 (VEE18_27090) yccS 2872092..2874254 (+) 2163 WP_122991440.1 YccS family putative transporter -
  AABK03_RS14050 (VEE18_27100) sxy/tfoX 2874217..2874846 (-) 630 WP_179150362.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK03_RS14055 (VEE18_27110) sulA 2875065..2875574 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK03_RS14060 (VEE18_27130) ompA 2875931..2876971 (+) 1041 WP_000750416.1 porin OmpA -
  AABK03_RS14065 (VEE18_27140) matP 2877047..2877499 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK03_RS14070 (VEE18_27150) ycbZ 2877685..2879445 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=101954 AABK03_RS14050 WP_179150362.1 2874217..2874846(-) (sxy/tfoX) [Escherichia coli strain PSS-08-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKDKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101954 AABK03_RS14050 WP_179150362.1 2874217..2874846(-) (sxy/tfoX) [Escherichia coli strain PSS-08-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGATAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment