Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   AB0R89_RS01810 Genome accession   NZ_CP160218
Coordinates   347367..347531 (+) Length   54 a.a.
NCBI ID   WP_272914175.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 342367..352531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS01800 (AB0R89_01800) - 344832..345122 (+) 291 WP_352427002.1 hypothetical protein -
  AB0R89_RS01805 (AB0R89_01805) - 345200..347350 (+) 2151 Protein_315 amino acid adenylation domain-containing protein -
  AB0R89_RS01810 (AB0R89_01810) comS 347367..347531 (+) 165 WP_272914175.1 competence protein ComS Regulator

Sequence


Protein


Download         Length: 54 a.a.        Molecular weight: 6244.27 Da        Isoelectric Point: 12.0559

>NTDB_id=1019512 AB0R89_RS01810 WP_272914175.1 347367..347531(+) (comS) [Bacillus velezensis strain AP45]
MRARRSSSLNRFDKRLIRSIILFPQHSAGCISLISSDRQARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1019512 AB0R89_RS01810 WP_272914175.1 347367..347531(+) (comS) [Bacillus velezensis strain AP45]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATTCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCAAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains


Predicted by InterproScan.

(9-52)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5


Multiple sequence alignment