Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | AB0R90_RS19355 | Genome accession | NZ_CP160217 |
| Coordinates | 3836638..3837783 (+) | Length | 381 a.a. |
| NCBI ID | WP_015240777.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain AP52 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3831638..3842783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R90_RS19335 (AB0R90_19335) | - | 3832537..3832965 (-) | 429 | WP_007407634.1 | DUF1934 domain-containing protein | - |
| AB0R90_RS19340 (AB0R90_19340) | - | 3833119..3833624 (+) | 506 | Protein_3753 | bacteriocin biosynthesis protein AlbG | - |
| AB0R90_RS19345 (AB0R90_19345) | - | 3833636..3835012 (-) | 1377 | WP_099567168.1 | YncE family protein | - |
| AB0R90_RS19350 (AB0R90_19350) | - | 3835052..3836407 (-) | 1356 | WP_015240776.1 | YncE family protein | - |
| AB0R90_RS19355 (AB0R90_19355) | rapF | 3836638..3837783 (+) | 1146 | WP_015240777.1 | tetratricopeptide repeat protein | Regulator |
| AB0R90_RS19360 (AB0R90_19360) | phrF | 3837767..3837886 (+) | 120 | WP_015240778.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| AB0R90_RS19365 (AB0R90_19365) | - | 3838084..3838287 (+) | 204 | WP_007407640.1 | helix-turn-helix transcriptional regulator | - |
| AB0R90_RS19370 (AB0R90_19370) | - | 3838301..3838504 (+) | 204 | WP_099567169.1 | hypothetical protein | - |
| AB0R90_RS19375 (AB0R90_19375) | - | 3838539..3838724 (+) | 186 | WP_007407642.1 | DUF4177 domain-containing protein | - |
| AB0R90_RS19380 (AB0R90_19380) | - | 3838910..3839191 (+) | 282 | WP_007407643.1 | hypothetical protein | - |
| AB0R90_RS19385 (AB0R90_19385) | - | 3839235..3839747 (+) | 513 | WP_099567170.1 | stage II sporulation protein M | - |
| AB0R90_RS19390 (AB0R90_19390) | - | 3840338..3840556 (-) | 219 | WP_003151056.1 | LuxR C-terminal-related transcriptional regulator | - |
| AB0R90_RS19395 (AB0R90_19395) | speB | 3840724..3841596 (-) | 873 | WP_007614448.1 | agmatinase | - |
| AB0R90_RS19400 (AB0R90_19400) | speE | 3841655..3842485 (-) | 831 | WP_003151052.1 | spermidine synthase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45572.57 Da Isoelectric Point: 4.5155
>NTDB_id=1019499 AB0R90_RS19355 WP_015240777.1 3836638..3837783(+) (rapF) [Bacillus velezensis strain AP52]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=1019499 AB0R90_RS19355 WP_015240777.1 3836638..3837783(+) (rapF) [Bacillus velezensis strain AP52]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
78.74 |
100 |
0.787 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
57.105 |
99.738 |
0.57 |