Detailed information NTG1019461

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R90_RS08845
• Genome accession: NZ_CP160217
• Coordinates: 1720774..1721553 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain AP52
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1715774..1726553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R90_RS08825 (AB0R90_08825)	trmFO	1716461..1717768 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R90_RS08830 (AB0R90_08830)	xerC	1717838..1718755 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
AB0R90_RS08835 (AB0R90_08835)	hslV	1718771..1719316 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R90_RS08840 (AB0R90_08840)	hslU	1719324..1720736 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R90_RS08845 (AB0R90_08845)	codY	1720774..1721553 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R90_RS08850 (AB0R90_08850)	flgB	1721907..1722296 (+)	390	WP_099566739.1	flagellar basal body rod protein FlgB	-
AB0R90_RS08855 (AB0R90_08855)	flgC	1722296..1722748 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R90_RS08860 (AB0R90_08860)	fliE	1722759..1723079 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R90_RS08865 (AB0R90_08865)	fliF	1723122..1724732 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R90_RS08870 (AB0R90_08870)	fliG	1724745..1725761 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R90_RS08875 (AB0R90_08875)	fliH	1725754..1726509 (+)	756	WP_099566740.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019461 AB0R90_RS08845 WP_003154263.1 1720774..1721553(+) (codY) [Bacillus velezensis strain AP52]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019461 AB0R90_RS08845 WP_003154263.1 1720774..1721553(+) (codY) [Bacillus velezensis strain AP52]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471