Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R90_RS01860 Genome accession   NZ_CP160217
Coordinates   348471..348908 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP52     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 343471..353908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R90_RS01835 (AB0R90_01835) - 344489..345625 (+) 1137 WP_099566385.1 zinc-dependent alcohol dehydrogenase -
  AB0R90_RS01840 (AB0R90_01840) - 345640..346074 (+) 435 WP_007409358.1 RDD family protein -
  AB0R90_RS01845 (AB0R90_01845) - 346147..346470 (+) 324 WP_072588781.1 YckD family protein -
  AB0R90_RS01850 (AB0R90_01850) - 346574..348010 (+) 1437 WP_099566386.1 family 1 glycosylhydrolase -
  AB0R90_RS01855 (AB0R90_01855) nin/comJ 348051..348449 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  AB0R90_RS01860 (AB0R90_01860) nucA/comI 348471..348908 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R90_RS01865 (AB0R90_01865) hxlB 349265..349822 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AB0R90_RS01870 (AB0R90_01870) hxlA 349819..350454 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  AB0R90_RS01875 (AB0R90_01875) - 350686..351048 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1019435 AB0R90_RS01860 WP_003156588.1 348471..348908(-) (nucA/comI) [Bacillus velezensis strain AP52]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1019435 AB0R90_RS01860 WP_003156588.1 348471..348908(-) (nucA/comI) [Bacillus velezensis strain AP52]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment