Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   DQM59_RS08380 Genome accession   NZ_LS483349
Coordinates   1655014..1655244 (-) Length   76 a.a.
NCBI ID   WP_002275977.1    Uniprot ID   Q8DVP7
Organism   Streptococcus mutans strain NCTC10449     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650014..1660244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM59_RS08355 (NCTC10449_01624) - 1650075..1650566 (+) 492 WP_018110171.1 YgjV family protein -
  DQM59_RS08360 (NCTC10449_01625) - 1650672..1651493 (-) 822 WP_032506494.1 Cof-type HAD-IIB family hydrolase -
  DQM59_RS08365 (NCTC10449_01626) copZ 1651739..1651942 (-) 204 WP_002264873.1 copper chaperone CopZ -
  DQM59_RS08370 (NCTC10449_01627) - 1651955..1654183 (-) 2229 WP_002267008.1 heavy metal translocating P-type ATPase -
  DQM59_RS08375 (NCTC10449_01628) - 1654180..1654623 (-) 444 WP_002267007.1 CopY/TcrY family copper transport repressor -
  DQM59_RS08380 (NCTC10449_01629) cipB 1655014..1655244 (-) 231 WP_002275977.1 bacteriocin class II family protein Regulator
  DQM59_RS08385 (NCTC10449_01631) rbfA 1655723..1656073 (-) 351 WP_002262599.1 30S ribosome-binding factor RbfA -
  DQM59_RS08390 (NCTC10449_01632) infB 1656307..1658529 (-) 2223 Protein_1572 translation initiation factor IF-2 -
  DQM59_RS10665 - 1658851..1659057 (-) 207 Protein_1573 translation initiation factor IF-2 N-terminal domain-containing protein -
  DQM59_RS08395 (NCTC10449_01633) - 1659078..1659380 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  DQM59_RS08400 (NCTC10449_01634) rnpM 1659373..1659669 (-) 297 WP_002263922.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7229.19 Da        Isoelectric Point: 3.7781

>NTDB_id=1019433 DQM59_RS08380 WP_002275977.1 1655014..1655244(-) (cipB) [Streptococcus mutans strain NCTC10449]
MNTQAFEQFNVMDNEALSTVEGGGMIRCALGTAGSAGLGFVGGMGAGTVTLPVVGTVSGAALGGWSGAAVGAATFC

Nucleotide


Download         Length: 231 bp        

>NTDB_id=1019433 DQM59_RS08380 WP_002275977.1 1655014..1655244(-) (cipB) [Streptococcus mutans strain NCTC10449]
ATGAATACACAAGCATTTGAACAATTTAACGTAATGGATAATGAAGCACTTTCAACTGTTGAGGGTGGTGGTATGATTAG
ATGTGCACTTGGCACAGCTGGTTCTGCAGGTTTAGGATTTGTAGGGGGTATGGGAGCTGGTACAGTTACTCTCCCAGTCG
TTGGTACAGTATCTGGAGCGGCTTTAGGAGGCTGGTCTGGAGCAGCTGTAGGTGCTGCTACTTTTTGTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

71.429

55.263

0.395