Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB0R74_RS12920 Genome accession   NZ_CP160216
Coordinates   2649309..2650061 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain JJ1043     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2644309..2655061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R74_RS12895 (AB0R74_12895) mreC 2644745..2645608 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  AB0R74_RS12900 (AB0R74_12900) mreB 2645639..2646652 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AB0R74_RS12905 (AB0R74_12905) radC 2646744..2647439 (-) 696 WP_007408165.1 DNA repair protein RadC -
  AB0R74_RS12910 (AB0R74_12910) - 2647471..2648040 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  AB0R74_RS12915 (AB0R74_12915) - 2648181..2649182 (-) 1002 WP_015240307.1 SPOR domain-containing protein -
  AB0R74_RS12920 (AB0R74_12920) comC 2649309..2650061 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  AB0R74_RS12925 (AB0R74_12925) - 2650201..2651493 (-) 1293 WP_015240309.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB0R74_RS12930 (AB0R74_12930) - 2651552..2654194 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  AB0R74_RS12935 (AB0R74_12935) - 2654647..2654838 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=1019406 AB0R74_RS12920 WP_012118107.1 2649309..2650061(-) (comC) [Bacillus velezensis strain JJ1043]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1019406 AB0R74_RS12920 WP_012118107.1 2649309..2650061(-) (comC) [Bacillus velezensis strain JJ1043]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGTTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATTGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment