Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R81_RS16910 Genome accession   NZ_CP160215
Coordinates   3429760..3431148 (-) Length   462 a.a.
NCBI ID   WP_122504228.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ213     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3424760..3436148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS16875 (AB0R81_16875) flgL 3424939..3425856 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AB0R81_RS16880 (AB0R81_16880) flgK 3425868..3427385 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AB0R81_RS16885 (AB0R81_16885) - 3427401..3427883 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R81_RS16890 (AB0R81_16890) flgM 3427898..3428164 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R81_RS16895 (AB0R81_16895) - 3428234..3428653 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AB0R81_RS16900 (AB0R81_16900) comFC 3428727..3429416 (-) 690 WP_204565382.1 double zinc ribbon domain-containing protein Machinery gene
  AB0R81_RS16905 (AB0R81_16905) - 3429422..3429706 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R81_RS16910 (AB0R81_16910) comFA 3429760..3431148 (-) 1389 WP_122504228.1 DEAD/DEAH box helicase Machinery gene
  AB0R81_RS16915 (AB0R81_16915) - 3431257..3432105 (-) 849 WP_003151387.1 DegV family protein -
  AB0R81_RS16920 (AB0R81_16920) degU 3432203..3432892 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R81_RS16925 (AB0R81_16925) degS 3432969..3434132 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R81_RS16930 (AB0R81_16930) - 3434355..3435002 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 52750.07 Da        Isoelectric Point: 10.1926

>NTDB_id=1019341 AB0R81_RS16910 WP_122504228.1 3429760..3431148(-) (comFA) [Bacillus velezensis strain JJ213]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKVNCWTS

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1019341 AB0R81_RS16910 WP_122504228.1 3429760..3431148(-) (comFA) [Bacillus velezensis strain JJ213]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAGTAAATTGTTGGACTAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.882

99.134

0.623

Multiple sequence alignment