Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R81_RS16900 Genome accession   NZ_CP160215
Coordinates   3428727..3429416 (-) Length   229 a.a.
NCBI ID   WP_204565382.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ213     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423727..3434416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS16865 (AB0R81_16865) fliW 3423818..3424249 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AB0R81_RS16870 (AB0R81_16870) - 3424279..3424848 (-) 570 WP_007407476.1 DUF6470 family protein -
  AB0R81_RS16875 (AB0R81_16875) flgL 3424939..3425856 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AB0R81_RS16880 (AB0R81_16880) flgK 3425868..3427385 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AB0R81_RS16885 (AB0R81_16885) - 3427401..3427883 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R81_RS16890 (AB0R81_16890) flgM 3427898..3428164 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R81_RS16895 (AB0R81_16895) - 3428234..3428653 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AB0R81_RS16900 (AB0R81_16900) comFC 3428727..3429416 (-) 690 WP_204565382.1 double zinc ribbon domain-containing protein Machinery gene
  AB0R81_RS16905 (AB0R81_16905) - 3429422..3429706 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R81_RS16910 (AB0R81_16910) comFA 3429760..3431148 (-) 1389 WP_122504228.1 DEAD/DEAH box helicase Machinery gene
  AB0R81_RS16915 (AB0R81_16915) - 3431257..3432105 (-) 849 WP_003151387.1 DegV family protein -
  AB0R81_RS16920 (AB0R81_16920) degU 3432203..3432892 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R81_RS16925 (AB0R81_16925) degS 3432969..3434132 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.93 Da        Isoelectric Point: 8.2921

>NTDB_id=1019340 AB0R81_RS16900 WP_204565382.1 3428727..3429416(-) (comFC) [Bacillus velezensis strain JJ213]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019340 AB0R81_RS16900 WP_204565382.1 3428727..3429416(-) (comFC) [Bacillus velezensis strain JJ213]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment