Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB0R81_RS13110 Genome accession   NZ_CP160215
Coordinates   2688255..2689007 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain JJ213     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2683255..2694007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS13085 (AB0R81_13085) mreC 2683691..2684554 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  AB0R81_RS13090 (AB0R81_13090) mreB 2684585..2685598 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AB0R81_RS13095 (AB0R81_13095) radC 2685690..2686385 (-) 696 WP_007408165.1 DNA repair protein RadC -
  AB0R81_RS13100 (AB0R81_13100) - 2686417..2686986 (-) 570 WP_069006954.1 nucleoside triphosphate pyrophosphatase -
  AB0R81_RS13105 (AB0R81_13105) - 2687127..2688128 (-) 1002 WP_069006955.1 SPOR domain-containing protein -
  AB0R81_RS13110 (AB0R81_13110) comC 2688255..2689007 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  AB0R81_RS13115 (AB0R81_13115) - 2689147..2690439 (-) 1293 WP_069006956.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB0R81_RS13120 (AB0R81_13120) - 2690498..2693140 (-) 2643 WP_069006957.1 valine--tRNA ligase -
  AB0R81_RS13125 (AB0R81_13125) - 2693593..2693784 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=1019330 AB0R81_RS13110 WP_012118107.1 2688255..2689007(-) (comC) [Bacillus velezensis strain JJ213]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1019330 AB0R81_RS13110 WP_012118107.1 2688255..2689007(-) (comC) [Bacillus velezensis strain JJ213]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCGGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment