Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB0R81_RS12300 Genome accession   NZ_CP160215
Coordinates   2537745..2538512 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus velezensis strain JJ213     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2532745..2543512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS12280 (AB0R81_12280) - 2532947..2533759 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  AB0R81_RS12285 (AB0R81_12285) ccpN 2533785..2534423 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  AB0R81_RS12290 (AB0R81_12290) glyS 2534524..2536563 (-) 2040 WP_122504126.1 glycine--tRNA ligase subunit beta -
  AB0R81_RS12295 (AB0R81_12295) glyQ 2536556..2537443 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  AB0R81_RS12300 (AB0R81_12300) recO 2537745..2538512 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  AB0R81_RS12305 (AB0R81_12305) - 2538549..2538692 (-) 144 WP_007408286.1 YqzL family protein -
  AB0R81_RS12310 (AB0R81_12310) era 2538848..2539753 (-) 906 WP_007408285.1 GTPase Era -
  AB0R81_RS12315 (AB0R81_12315) - 2539734..2540144 (-) 411 WP_003152976.1 cytidine deaminase -
  AB0R81_RS12320 (AB0R81_12320) - 2540268..2540642 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  AB0R81_RS12325 (AB0R81_12325) ybeY 2540623..2541096 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  AB0R81_RS12330 (AB0R81_12330) - 2541097..2543229 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=1019323 AB0R81_RS12300 WP_012118014.1 2537745..2538512(-) (recO) [Bacillus velezensis strain JJ213]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1019323 AB0R81_RS12300 WP_012118014.1 2537745..2538512(-) (recO) [Bacillus velezensis strain JJ213]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment