Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | AB0R80_RS12875 | Genome accession | NZ_CP160213 |
| Coordinates | 2639193..2640230 (-) | Length | 345 a.a. |
| NCBI ID | WP_053573197.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JM199 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2634193..2645230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R80_RS12825 (AB0R80_12825) | tasA | 2634427..2635212 (-) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| AB0R80_RS12830 (AB0R80_12830) | sipW | 2635277..2635861 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| AB0R80_RS12835 (AB0R80_12835) | tapA | 2635833..2636504 (-) | 672 | WP_015417813.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB0R80_RS12840 (AB0R80_12840) | - | 2636763..2637092 (+) | 330 | WP_060674607.1 | DUF3889 domain-containing protein | - |
| AB0R80_RS12845 (AB0R80_12845) | - | 2637132..2637311 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| AB0R80_RS12850 (AB0R80_12850) | comGG | 2637368..2637745 (-) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB0R80_RS12855 (AB0R80_12855) | - | 2637746..2638141 (-) | 396 | WP_327935032.1 | ComGF family competence protein | - |
| AB0R80_RS12860 (AB0R80_12860) | comGE | 2638155..2638469 (-) | 315 | WP_060674611.1 | competence type IV pilus minor pilin ComGE | - |
| AB0R80_RS12865 (AB0R80_12865) | comGD | 2638453..2638890 (-) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB0R80_RS12870 (AB0R80_12870) | comGC | 2638880..2639188 (-) | 309 | WP_015417818.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB0R80_RS12875 (AB0R80_12875) | comGB | 2639193..2640230 (-) | 1038 | WP_053573197.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB0R80_RS12880 (AB0R80_12880) | comGA | 2640217..2641287 (-) | 1071 | WP_053573196.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB0R80_RS12885 (AB0R80_12885) | - | 2641480..2642430 (-) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| AB0R80_RS12890 (AB0R80_12890) | - | 2642576..2643877 (+) | 1302 | WP_021494315.1 | hemolysin family protein | - |
| AB0R80_RS12895 (AB0R80_12895) | - | 2643915..2644745 (-) | 831 | WP_039254482.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39586.97 Da Isoelectric Point: 9.6788
>NTDB_id=1019171 AB0R80_RS12875 WP_053573197.1 2639193..2640230(-) (comGB) [Bacillus velezensis strain JM199]
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1019171 AB0R80_RS12875 WP_053573197.1 2639193..2640230(-) (comGB) [Bacillus velezensis strain JM199]
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.635 |
93.623 |
0.614 |