Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAMY6614_RS07430 Genome accession   NZ_CP006960
Coordinates   1507713..1508429 (+) Length   238 a.a.
NCBI ID   WP_061861963.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502713..1513429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS07400 (BAMY6614_07790) - 1502892..1503269 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  BAMY6614_RS07405 (BAMY6614_07795) - 1503279..1503710 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  BAMY6614_RS07410 (BAMY6614_07800) - 1503726..1503968 (-) 243 WP_003155595.1 spore germination protein -
  BAMY6614_RS07415 (BAMY6614_07805) - 1503983..1504243 (-) 261 WP_007408496.1 spore germination protein -
  BAMY6614_RS07420 (BAMY6614_07810) treP 1504514..1505929 (+) 1416 WP_021493878.1 PTS system trehalose-specific EIIBC component -
  BAMY6614_RS07425 (BAMY6614_07815) treC 1506006..1507691 (+) 1686 WP_061861962.1 alpha,alpha-phosphotrehalase -
  BAMY6614_RS07430 (BAMY6614_07820) treR 1507713..1508429 (+) 717 WP_061861963.1 trehalose operon repressor Regulator
  BAMY6614_RS07435 (BAMY6614_07825) - 1508562..1509227 (+) 666 WP_061861964.1 NAD(P)H-dependent oxidoreductase -
  BAMY6614_RS07440 (BAMY6614_07830) - 1509263..1510024 (-) 762 WP_007408500.1 YibE/F family protein -
  BAMY6614_RS07445 (BAMY6614_07835) - 1510021..1511160 (-) 1140 WP_061861965.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27437.53 Da        Isoelectric Point: 8.4009

>NTDB_id=101914 BAMY6614_RS07430 WP_061861963.1 1507713..1508429(+) (treR) [Bacillus amyloliquefaciens UMAF6614]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSKTLGKETRTAVHRLGLILPPTEAAKELGAEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=101914 BAMY6614_RS07430 WP_061861963.1 1507713..1508429(+) (treR) [Bacillus amyloliquefaciens UMAF6614]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGATAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGAAAACGCTCGGAAAAGAGACGAGAACGGCGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCACAGAAGCCGCAAAAGAGCTTGGTGCAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

43.22

99.16

0.429

Multiple sequence alignment