Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R80_RS01840 Genome accession   NZ_CP160213
Coordinates   379470..379907 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM199     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 374470..384907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R80_RS01815 (AB0R80_01815) - 375489..376625 (+) 1137 WP_224462965.1 zinc-dependent alcohol dehydrogenase -
  AB0R80_RS01820 (AB0R80_01820) - 376640..377074 (+) 435 WP_012116767.1 RDD family protein -
  AB0R80_RS01825 (AB0R80_01825) - 377147..377470 (+) 324 WP_007409357.1 YckD family protein -
  AB0R80_RS01830 (AB0R80_01830) - 377574..379010 (+) 1437 WP_327935313.1 family 1 glycosylhydrolase -
  AB0R80_RS01835 (AB0R80_01835) nin/comJ 379051..379449 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  AB0R80_RS01840 (AB0R80_01840) nucA/comI 379470..379907 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R80_RS01845 (AB0R80_01845) hxlB 380265..380822 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  AB0R80_RS01850 (AB0R80_01850) hxlA 380819..381454 (-) 636 WP_327935315.1 3-hexulose-6-phosphate synthase -
  AB0R80_RS01855 (AB0R80_01855) - 381686..382048 (+) 363 WP_327935316.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1019133 AB0R80_RS01840 WP_003156588.1 379470..379907(-) (nucA/comI) [Bacillus velezensis strain JM199]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1019133 AB0R80_RS01840 WP_003156588.1 379470..379907(-) (nucA/comI) [Bacillus velezensis strain JM199]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment