Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAMY6614_RS06390 Genome accession   NZ_CP006960
Coordinates   1273882..1274517 (+) Length   211 a.a.
NCBI ID   WP_014417035.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268882..1279517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS06355 (BAMY6614_06675) - 1269863..1270162 (-) 300 WP_014417026.1 spore coat protein -
  BAMY6614_RS06360 (BAMY6614_06680) - 1270170..1270376 (-) 207 WP_014417027.1 hypothetical protein -
  BAMY6614_RS06365 (BAMY6614_06685) - 1270395..1271531 (-) 1137 WP_061861900.1 zinc-dependent alcohol dehydrogenase -
  BAMY6614_RS06370 (BAMY6614_06690) - 1271550..1271918 (-) 369 WP_003156070.1 spore coat protein -
  BAMY6614_RS06375 (BAMY6614_06695) - 1271936..1272181 (-) 246 WP_015416919.1 hypothetical protein -
  BAMY6614_RS20125 (BAMY6614_06700) - 1272328..1272615 (+) 288 WP_017419184.1 hypothetical protein -
  BAMY6614_RS06385 (BAMY6614_06705) - 1272672..1273889 (+) 1218 WP_025650280.1 sensor histidine kinase -
  BAMY6614_RS06390 (BAMY6614_06710) vraR 1273882..1274517 (+) 636 WP_014417035.1 response regulator transcription factor Regulator
  BAMY6614_RS06395 (BAMY6614_06715) - 1274616..1276769 (+) 2154 WP_025650281.1 MMPL family transporter -
  BAMY6614_RS06400 (BAMY6614_06720) - 1276803..1277525 (-) 723 WP_007409319.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BAMY6614_RS06405 (BAMY6614_06725) abc-f 1277666..1279294 (-) 1629 WP_061861901.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23635.32 Da        Isoelectric Point: 5.1722

>NTDB_id=101911 BAMY6614_RS06390 WP_014417035.1 1273882..1274517(+) (vraR) [Bacillus amyloliquefaciens UMAF6614]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTEKEIIVLQAVAQ
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=101911 BAMY6614_RS06390 WP_014417035.1 1273882..1274517(+) (vraR) [Bacillus amyloliquefaciens UMAF6614]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAAGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATCATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATCGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGAAAAGGAAATCATAGTTCTGCAAGCCGTTGCGCAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

99.052

0.365

Multiple sequence alignment