Detailed information NTG0101910

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMY6614_RS05810
• Genome accession: NZ_CP006960
• Coordinates: 1174626..1175759 (+)
• Length: 377 a.a.
• NCBI ID: WP_061861869.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1169626..1180759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS05780 (BAMY6614_06065)	-	1169794..1171515 (+)	1722	WP_061861868.1	pyruvate oxidase	-
BAMY6614_RS20655	-	1172014..1172277 (+)	264	Protein_1124	peptidoglycan-binding domain-containing protein	-
BAMY6614_RS20365 (BAMY6614_06080)	-	1172399..1173382 (+)	984	WP_076983723.1	HNH endonuclease signature motif containing protein	-
BAMY6614_RS05800 (BAMY6614_06085)	-	1173396..1173953 (+)	558	WP_022552615.1	SMI1/KNR4 family protein	-
BAMY6614_RS05805 (BAMY6614_06090)	-	1174048..1174326 (-)	279	WP_022552616.1	hypothetical protein	-
BAMY6614_RS05810 (BAMY6614_06095)	rapC	1174626..1175759 (+)	1134	WP_061861869.1	Rap family tetratricopeptide repeat protein	Regulator
BAMY6614_RS20555 (BAMY6614_06100)	-	1175756..1175890 (+)	135	WP_254926347.1	hypothetical protein	-
BAMY6614_RS20370 (BAMY6614_06105)	-	1176274..1176504 (-)	231	WP_022552619.1	hypothetical protein	-
BAMY6614_RS05825 (BAMY6614_06115)	-	1176881..1177438 (-)	558	WP_017419238.1	hypothetical protein	-
BAMY6614_RS20375 (BAMY6614_06120)	-	1177535..1178152 (-)	618	WP_014416945.1	hypothetical protein	-
BAMY6614_RS05835 (BAMY6614_06125)	-	1178336..1178602 (-)	267	WP_014416946.1	hypothetical protein	-
BAMY6614_RS05840 (BAMY6614_06130)	-	1178707..1179984 (-)	1278	WP_088056325.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44739.04 Da
• Isoelectric Point: 5.1066

>NTDB_id=101910 BAMY6614_RS05810 WP_061861869.1 1174626..1175759(+) (rapC) [Bacillus amyloliquefaciens UMAF6614]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKNQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGENLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEEKRLWSDFAELTEQLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS

Nucleotide

• Length: 1134 bp

>NTDB_id=101910 BAMY6614_RS05810 WP_061861869.1 1174626..1175759(+) (rapC) [Bacillus amyloliquefaciens UMAF6614]
ATGGATCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTCGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCAACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTGAAAAAAGCCAAGCAATTGTTTGAAAAAAATCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
ATGAGGAAAAAGTGAAAAGGATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGGAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCGAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGCTACTTAGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACTGAACAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• MalT-like TPR region (TPR_MalT) (148-296)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	98.939	0.371