Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | AABJ69_RS13370 | Genome accession | NZ_AP027666 |
| Coordinates | 2728845..2729474 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain PSS-04 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2719673..2757310 | 2728845..2729474 | within | 0 |
Gene organization within MGE regions
Location: 2719673..2757310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ69_RS13320 (VEE17_25740) | tusE | 2719944..2720273 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| AABJ69_RS13325 (VEE17_25750) | yccX | 2720270..2720548 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| AABJ69_RS13330 (VEE17_25760) | rlmI | 2720643..2721833 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| AABJ69_RS13335 (VEE17_25770) | hspQ | 2721891..2722208 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| AABJ69_RS13340 (VEE17_25780) | yccU | 2722253..2722666 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| AABJ69_RS13345 (VEE17_25790) | yccT | 2722839..2723501 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| AABJ69_RS13350 (VEE17_25800) | mgsA | 2723597..2724055 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| AABJ69_RS13355 (VEE17_25810) | helD | 2724087..2726141 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| AABJ69_RS13360 (VEE17_25820) | yccF | 2726264..2726710 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| AABJ69_RS13365 (VEE17_25830) | yccS | 2726720..2728882 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| AABJ69_RS13370 (VEE17_25840) | sxy/tfoX | 2728845..2729474 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| AABJ69_RS13375 (VEE17_25850) | sulA | 2729693..2730202 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| AABJ69_RS13380 (VEE17_25870) | ompA | 2730559..2731599 (+) | 1041 | WP_241233288.1 | porin OmpA | - |
| AABJ69_RS13385 (VEE17_25880) | matP | 2731675..2732127 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| AABJ69_RS13390 (VEE17_25890) | ycbZ | 2732313..2734073 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| AABJ69_RS13395 (VEE17_25900) | fabA | 2734142..2734660 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| AABJ69_RS13400 (VEE17_25910) | rmf | 2734730..2734897 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| AABJ69_RS13405 (VEE17_25920) | pqiC | 2735153..2735716 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| AABJ69_RS13410 (VEE17_25930) | pqiB | 2735713..2737353 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| AABJ69_RS13415 (VEE17_25940) | pqiA | 2737358..2738611 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| AABJ69_RS13420 (VEE17_25950) | uup | 2738741..2740648 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| AABJ69_RS13425 (VEE17_25960) | rlmKL | 2740660..2742768 (-) | 2109 | WP_001086539.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| AABJ69_RS13430 (VEE17_25970) | ycbX | 2743012..2744121 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| AABJ69_RS13435 (VEE17_25980) | zapC | 2744118..2744660 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| AABJ69_RS13440 (VEE17_25990) | pyrD | 2744834..2745844 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| AABJ69_RS13445 (VEE17_26000) | ycbF | 2745955..2746692 (-) | 738 | WP_001111465.1 | fimbrial chaperone | - |
| AABJ69_RS13450 (VEE17_26010) | ycbV | 2746658..2747173 (-) | 516 | WP_241233286.1 | fimbrial protein | - |
| AABJ69_RS13455 (VEE17_26020) | ycbU | 2747181..2747723 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| AABJ69_RS13460 (VEE17_26030) | elfG | 2747735..2748805 (-) | 1071 | WP_001165668.1 | fimbrial protein | - |
| AABJ69_RS13465 (VEE17_26040) | - | 2748796..2750814 (-) | 2019 | Protein_2634 | fimbrial biogenesis usher protein | - |
| AABJ69_RS13475 (VEE17_26070) | - | 2752145..2752732 (-) | 588 | Protein_2636 | FimD/PapC N-terminal domain-containing protein | - |
| AABJ69_RS13480 (VEE17_26080) | elfD | 2752757..2753458 (-) | 702 | WP_001295349.1 | molecular chaperone | - |
| AABJ69_RS13485 (VEE17_26090) | elfA | 2753541..2754080 (-) | 540 | WP_000750293.1 | fimbrial protein | - |
| AABJ69_RS13490 (VEE17_26100) | ssuE | 2754436..2755011 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| AABJ69_RS13495 (VEE17_26110) | ssuA | 2755004..2755963 (+) | 960 | WP_001244308.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| AABJ69_RS13500 (VEE17_26120) | ssuD | 2755960..2757105 (+) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=101910 AABJ69_RS13370 WP_000839153.1 2728845..2729474(-) (sxy/tfoX) [Escherichia coli strain PSS-04]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=101910 AABJ69_RS13370 WP_000839153.1 2728845..2729474(-) (sxy/tfoX) [Escherichia coli strain PSS-04]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |