Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB0R79_RS12805 Genome accession   NZ_CP160211
Coordinates   2612996..2613796 (-) Length   266 a.a.
NCBI ID   WP_366597572.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607996..2618796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS12775 (AB0R79_12775) - 2608533..2609165 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  AB0R79_RS12780 (AB0R79_12780) - 2609462..2609599 (+) 138 WP_014470646.1 hypothetical protein -
  AB0R79_RS12785 (AB0R79_12785) - 2609693..2610811 (+) 1119 WP_015240192.1 NADH-dependent flavin oxidoreductase -
  AB0R79_RS12790 (AB0R79_12790) - 2610939..2611151 (+) 213 WP_007408362.1 spore germination protein -
  AB0R79_RS12795 (AB0R79_12795) - 2611277..2611489 (+) 213 WP_003153181.1 spore germination protein -
  AB0R79_RS12800 (AB0R79_12800) alr 2611666..2612847 (+) 1182 WP_094031829.1 alanine racemase -
  AB0R79_RS12805 (AB0R79_12805) spo0A 2612996..2613796 (-) 801 WP_366597572.1 sporulation transcription factor Spo0A Regulator
  AB0R79_RS12810 (AB0R79_12810) spoIVB 2614077..2615357 (-) 1281 WP_167340751.1 SpoIVB peptidase -
  AB0R79_RS12815 (AB0R79_12815) recN 2615521..2617251 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  AB0R79_RS12820 (AB0R79_12820) argR 2617283..2617732 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  AB0R79_RS12825 (AB0R79_12825) - 2617829..2618674 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29620.07 Da        Isoelectric Point: 6.1630

>NTDB_id=1019012 AB0R79_RS12805 WP_366597572.1 2612996..2613796(-) (spo0A) [Bacillus velezensis strain JM236]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKSFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1019012 AB0R79_RS12805 WP_366597572.1 2612996..2613796(-) (spo0A) [Bacillus velezensis strain JM236]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGTCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAACGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTCAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951

Multiple sequence alignment