Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB0R79_RS08485 Genome accession   NZ_CP160211
Coordinates   1681190..1682089 (+) Length   299 a.a.
NCBI ID   WP_015239848.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1676190..1687089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS08465 (AB0R79_08465) - 1676880..1678583 (+) 1704 WP_015239846.1 hypothetical protein -
  AB0R79_RS08470 (AB0R79_08470) - 1678580..1678861 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  AB0R79_RS08475 (AB0R79_08475) sucC 1679036..1680193 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0R79_RS08480 (AB0R79_08480) sucD 1680222..1681124 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  AB0R79_RS08485 (AB0R79_08485) dprA 1681190..1682089 (+) 900 WP_015239848.1 DNA-processing protein DprA Machinery gene
  AB0R79_RS08490 (AB0R79_08490) topA 1682271..1684346 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  AB0R79_RS08495 (AB0R79_08495) trmFO 1684411..1685718 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R79_RS08500 (AB0R79_08500) xerC 1685788..1686705 (+) 918 WP_015239850.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32831.98 Da        Isoelectric Point: 8.1570

>NTDB_id=1019006 AB0R79_RS08485 WP_015239848.1 1681190..1682089(+) (dprA) [Bacillus velezensis strain JM236]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITAI
PISSSRYPTWLKAIYDPPAVLYAKGNPLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1019006 AB0R79_RS08485 WP_015239848.1 1681190..1682089(+) (dprA) [Bacillus velezensis strain JM236]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGCCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACCC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment