Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB0R79_RS07420 Genome accession   NZ_CP160211
Coordinates   1423634..1423918 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418634..1428918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS07400 (AB0R79_07400) - 1419877..1420785 (+) 909 WP_167340640.1 ketopantoate reductase family protein -
  AB0R79_RS07405 (AB0R79_07405) - 1420817..1422049 (-) 1233 WP_007409644.1 aminopeptidase -
  AB0R79_RS07410 (AB0R79_07410) - 1422150..1422284 (-) 135 WP_003154559.1 protein YkpC -
  AB0R79_RS07415 (AB0R79_07415) mreBH 1422356..1423363 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  AB0R79_RS07420 (AB0R79_07420) abrB 1423634..1423918 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB0R79_RS07425 (AB0R79_07425) - 1424091..1425395 (+) 1305 WP_032871371.1 ATP-binding protein -
  AB0R79_RS07430 (AB0R79_07430) - 1425397..1426224 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  AB0R79_RS07435 (AB0R79_07435) ktrC 1426265..1426930 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  AB0R79_RS07440 (AB0R79_07440) ade 1427079..1428812 (+) 1734 WP_007409648.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=1019005 AB0R79_RS07420 WP_003154557.1 1423634..1423918(+) (abrB) [Bacillus velezensis strain JM236]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1019005 AB0R79_RS07420 WP_003154557.1 1423634..1423918(+) (abrB) [Bacillus velezensis strain JM236]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment