Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB0R79_RS05430 Genome accession   NZ_CP160211
Coordinates   1055751..1056329 (+) Length   192 a.a.
NCBI ID   WP_366597669.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050751..1061329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS05410 (AB0R79_05410) - 1051251..1052543 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  AB0R79_RS05415 (AB0R79_05415) - 1052665..1054188 (-) 1524 WP_366597667.1 FAD-dependent oxidoreductase -
  AB0R79_RS05420 (AB0R79_05420) - 1054313..1055170 (+) 858 WP_366597668.1 SDR family oxidoreductase -
  AB0R79_RS05425 (AB0R79_05425) - 1055201..1055434 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  AB0R79_RS05430 (AB0R79_05430) comK 1055751..1056329 (+) 579 WP_366597669.1 competence protein ComK Regulator
  AB0R79_RS05435 (AB0R79_05435) - 1056475..1056843 (+) 369 WP_366597670.1 iron chaperone -
  AB0R79_RS05440 (AB0R79_05440) - 1056870..1057241 (+) 372 WP_015239528.1 iron chaperone -
  AB0R79_RS05445 (AB0R79_05445) - 1057288..1058499 (-) 1212 WP_007409185.1 GNAT family N-acetyltransferase -
  AB0R79_RS05450 (AB0R79_05450) - 1058656..1059366 (-) 711 WP_007409183.1 YrpD family protein -
  AB0R79_RS05455 (AB0R79_05455) - 1059562..1059831 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  AB0R79_RS05460 (AB0R79_05460) - 1059864..1060181 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22291.51 Da        Isoelectric Point: 8.1419

>NTDB_id=1018992 AB0R79_RS05430 WP_366597669.1 1055751..1056329(+) (comK) [Bacillus velezensis strain JM236]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFSTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1018992 AB0R79_RS05430 WP_366597669.1 1055751..1056329(+) (comK) [Bacillus velezensis strain JM236]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCTCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment