Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   AB0R79_RS01810 Genome accession   NZ_CP160211
Coordinates   347473..347637 (+) Length   54 a.a.
NCBI ID   WP_269461319.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 342473..352637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS01800 (AB0R79_01800) - 344938..345228 (+) 291 WP_352427002.1 hypothetical protein -
  AB0R79_RS01805 (AB0R79_01805) - 345306..347456 (+) 2151 Protein_315 amino acid adenylation domain-containing protein -
  AB0R79_RS01810 (AB0R79_01810) comS 347473..347637 (+) 165 WP_269461319.1 competence protein ComS Regulator

Sequence


Protein


Download         Length: 54 a.a.        Molecular weight: 6184.17 Da        Isoelectric Point: 12.0559

>NTDB_id=1018982 AB0R79_RS01810 WP_269461319.1 347473..347637(+) (comS) [Bacillus velezensis strain JM236]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRQARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1018982 AB0R79_RS01810 WP_269461319.1 347473..347637(+) (comS) [Bacillus velezensis strain JM236]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCAAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains


Predicted by InterproScan.

(9-52)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

63.636

81.481

0.519


Multiple sequence alignment