Detailed information NTG0101898

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAMY6614_RS05050
• Genome accession: NZ_CP006960
• Coordinates: 993769..994890 (+)
• Length: 373 a.a.
• NCBI ID: WP_061861817.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 988769..999890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS05030 (BAMY6614_05295)	-	989078..990073 (-)	996	WP_061861813.1	DUF5105 domain-containing protein	-
BAMY6614_RS05035 (BAMY6614_05300)	-	990200..991600 (+)	1401	WP_061861814.1	YcdB/YcdC domain-containing protein	-
BAMY6614_RS05040 (BAMY6614_05305)	-	991801..993159 (+)	1359	WP_061861815.1	YcdB/YcdC domain-containing protein	-
BAMY6614_RS05045 (BAMY6614_05310)	-	993156..993659 (-)	504	WP_061861816.1	M15 family metallopeptidase	-
BAMY6614_RS05050 (BAMY6614_05315)	rapF	993769..994890 (+)	1122	WP_061861817.1	tetratricopeptide repeat protein	Regulator
BAMY6614_RS05055 (BAMY6614_05320)	-	995007..995783 (+)	777	WP_017419351.1	glucose 1-dehydrogenase	-
BAMY6614_RS05060 (BAMY6614_05325)	-	995787..997025 (-)	1239	WP_061861818.1	MFS transporter	-
BAMY6614_RS05065 (BAMY6614_05330)	-	997377..999056 (+)	1680	WP_061861819.1	glycoside hydrolase family 13 protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44315.50 Da
• Isoelectric Point: 5.0806

>NTDB_id=101898 BAMY6614_RS05050 WP_061861817.1 993769..994890(+) (rapF) [Bacillus amyloliquefaciens UMAF6614]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=101898 BAMY6614_RS05050 WP_061861817.1 993769..994890(+) (rapF) [Bacillus amyloliquefaciens UMAF6614]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAAGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402