Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB0R71_RS16850 Genome accession   NZ_CP160210
Coordinates   3413136..3414299 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain JM907     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408136..3419299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R71_RS16820 (AB0R71_16815) - 3408400..3408819 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R71_RS16825 (AB0R71_16820) comFC 3408893..3409582 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  AB0R71_RS16830 (AB0R71_16825) - 3409588..3409872 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  AB0R71_RS16835 (AB0R71_16830) comFA 3409930..3411315 (-) 1386 WP_220007557.1 DEAD/DEAH box helicase Machinery gene
  AB0R71_RS16840 (AB0R71_16835) - 3411424..3412272 (-) 849 WP_327975732.1 DegV family protein -
  AB0R71_RS16845 (AB0R71_16840) degU 3412370..3413059 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R71_RS16850 (AB0R71_16845) degS 3413136..3414299 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R71_RS16855 (AB0R71_16850) - 3414522..3415169 (+) 648 WP_061581228.1 YigZ family protein -
  AB0R71_RS16860 (AB0R71_16855) - 3415174..3416394 (+) 1221 WP_220007558.1 LCP family protein -
  AB0R71_RS16865 (AB0R71_16860) - 3416494..3417570 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  AB0R71_RS16870 (AB0R71_16865) - 3417703..3418899 (-) 1197 WP_327975734.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=1018965 AB0R71_RS16850 WP_007407484.1 3413136..3414299(-) (degS) [Bacillus velezensis strain JM907]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1018965 AB0R71_RS16850 WP_007407484.1 3413136..3414299(-) (degS) [Bacillus velezensis strain JM907]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGACCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment