Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL56_RS09170 Genome accession   NZ_LS483342
Coordinates   1759116..1759850 (-) Length   244 a.a.
NCBI ID   WP_000589162.1    Uniprot ID   Q8E1S3
Organism   Streptococcus agalactiae strain NCTC11930     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754116..1764850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL56_RS09155 (NCTC11930_01809) proB 1754971..1755774 (-) 804 WP_000820352.1 glutamate 5-kinase -
  DQL56_RS09160 (NCTC11930_01810) - 1755915..1757300 (+) 1386 WP_001865878.1 PTS transporter subunit EIIC -
  DQL56_RS09165 (NCTC11930_01811) - 1757508..1759112 (-) 1605 WP_001104587.1 ABC transporter permease -
  DQL56_RS09170 (NCTC11930_01812) pptA 1759116..1759850 (-) 735 WP_000589162.1 ABC transporter ATP-binding protein Regulator
  DQL56_RS09175 (NCTC11930_01813) - 1759870..1760175 (-) 306 WP_000711207.1 bacteriocin immunity protein -
  DQL56_RS09180 (NCTC11930_01814) recP/tkt 1760388..1762373 (-) 1986 WP_000141866.1 transketolase Machinery gene
  DQL56_RS09185 (NCTC11930_01815) - 1762498..1763928 (-) 1431 WP_001217283.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27505.68 Da        Isoelectric Point: 4.7523

>NTDB_id=1018908 DQL56_RS09170 WP_000589162.1 1759116..1759850(-) (pptA) [Streptococcus agalactiae strain NCTC11930]
MIKFEHVSKVYGEKEALSDLTLSVKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMKYPDKDLETIYLELAGRQA
SREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1018908 DQL56_RS09170 WP_000589162.1 1759116..1759850(-) (pptA) [Streptococcus agalactiae strain NCTC11930]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTGTTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGAAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AGTAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E1S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.683

99.59

0.385
  pptA Streptococcus salivarius strain HSISS4

38.272

99.59

0.381

Multiple sequence alignment