Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX013_RS05230 Genome accession   NZ_CP160207
Coordinates   1174739..1175209 (-) Length   156 a.a.
NCBI ID   WP_037391581.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel04     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169739..1180209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX013_RS05210 (ABX013_06990) lpdA 1170060..1171811 (+) 1752 WP_371751863.1 dihydrolipoyl dehydrogenase -
  ABX013_RS05215 (ABX013_06985) - 1172085..1173212 (+) 1128 WP_084549997.1 AI-2E family transporter -
  ABX013_RS05220 (ABX013_06975) rpsT 1173334..1173600 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX013_RS05225 (ABX013_17910) - 1173633..1174586 (+) 954 WP_371751864.1 bile acid:sodium symporter family protein -
  ABX013_RS05230 (ABX013_17915) recX 1174739..1175209 (-) 471 WP_037391581.1 recombination regulator RecX Regulator
  ABX013_RS05235 (ABX013_06945) - 1175206..1175913 (-) 708 WP_371751865.1 phosphoglycolate phosphatase -
  ABX013_RS05240 (ABX013_06935) - 1176071..1177141 (-) 1071 WP_367426872.1 aldose epimerase family protein -
  ABX013_RS05245 (ABX013_17920) - 1177128..1178441 (-) 1314 WP_371751866.1 replication-associated recombination protein A -
  ABX013_RS05250 (ABX013_06905) - 1178610..1178957 (+) 348 WP_084549983.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18173.58 Da        Isoelectric Point: 8.0793

>NTDB_id=1018886 ABX013_RS05230 WP_037391581.1 1174739..1175209(-) (recX) [Snodgrassella alvi strain Amel04]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1018886 ABX013_RS05230 WP_037391581.1 1174739..1175209(-) (recX) [Snodgrassella alvi strain Amel04]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGCAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTTGATGCAGCTCTGATTGCAGATTATTTACCAGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment