Detailed information NTG1018866

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABXR98_RS07570
• Genome accession: NZ_CP160206
• Coordinates: 1646434..1646895 (+)
• Length: 153 a.a.
• NCBI ID: WP_198189931.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1641434..1651895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR98_RS07550 (ABXR98_18855)	-	1641535..1643763 (-)	2229	WP_374694721.1	FepA family TonB-dependent siderophore receptor	-
ABXR98_RS07555 (ABXR98_18860)	-	1644136..1644939 (+)	804	WP_374694722.1	hypothetical protein	-
ABXR98_RS07560 (ABXR98_10390)	-	1645217..1645666 (+)	450	WP_198189929.1	pilin	-
ABXR98_RS07565 (ABXR98_18865)	-	1645836..1646285 (+)	450	WP_374694723.1	pilin	-
ABXR98_RS07570 (ABXR98_10380)	pilA	1646434..1646895 (+)	462	WP_198189931.1	pilin	Machinery gene
ABXR98_RS07575 (ABXR98_18870)	-	1647419..1648408 (+)	990	WP_374694724.1	sulfatase-like hydrolase/transferase	-
ABXR98_RS07580 (ABXR98_10360)	waaA	1648595..1649884 (-)	1290	WP_374694725.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 16009.43 Da
• Isoelectric Point: 9.3699

>NTDB_id=1018866 ABXR98_RS07570 WP_198189931.1 1646434..1646895(+) (pilA) [Snodgrassella alvi strain Amel03]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNNNCMSGDNNSLDTTIDEQTG
KYGVAKIGGTAKTGSISANAPTGCTITYTVNPNKVSASIATKTLVLDVLKNGSLKKNTSSTMPDKYIPKAFTI

Nucleotide

• Length: 462 bp

>NTDB_id=1018866 ABXR98_RS07570 WP_198189931.1 1646434..1646895(+) (pilA) [Snodgrassella alvi strain Amel03]
ATGAAAGCTTTTCAAAAAGGTTTTACTTTAATTGAATTGATGATCGTTATCGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAGGCTTCCAGTCTGGCTGCTGGTCTGAAAACTCAGA
TTATCGATAATTTGCAGAATAATAATTGTATGTCAGGTGACAATAATTCACTTGATACCACCATTGATGAGCAGACTGGT
AAATACGGTGTAGCAAAAATCGGTGGTACTGCTAAAACCGGCAGTATTTCTGCTAACGCTCCAACAGGCTGTACAATTAC
ATATACAGTAAACCCAAACAAAGTATCTGCTTCTATTGCTACTAAGACCTTAGTATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATACTTCTTCAACTATGCCTGATAAATATATACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-150)

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter nosocomialis M2	50.34	96.078	0.484