Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABXR98_RS04280 | Genome accession | NZ_CP160206 |
| Coordinates | 928466..929761 (+) | Length | 431 a.a. |
| NCBI ID | WP_374695168.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 923466..934761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXR98_RS04250 (ABXR98_15415) | bioH | 923800..924552 (-) | 753 | WP_025331791.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| ABXR98_RS04255 (ABXR98_15410) | - | 924551..925261 (+) | 711 | WP_232335960.1 | ComF family protein | - |
| ABXR98_RS04260 (ABXR98_15405) | - | 925588..926337 (+) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABXR98_RS04265 (ABXR98_15400) | ruvA | 926415..926996 (+) | 582 | WP_025331789.1 | Holliday junction branch migration protein RuvA | - |
| ABXR98_RS04270 (ABXR98_15395) | - | 927040..927591 (+) | 552 | WP_037392063.1 | 5'-3'-deoxyribonucleotidase | - |
| ABXR98_RS04275 (ABXR98_15390) | - | 927636..928250 (+) | 615 | WP_374695167.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABXR98_RS04280 (ABXR98_15380) | pilA | 928466..929761 (+) | 1296 | WP_374695168.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABXR98_RS04285 (ABXR98_15375) | - | 929982..930515 (+) | 534 | WP_374695169.1 | hypothetical protein | - |
| ABXR98_RS04290 (ABXR98_17955) | - | 930551..931669 (-) | 1119 | WP_374695170.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABXR98_RS04295 (ABXR98_17960) | - | 931701..933389 (-) | 1689 | WP_374695171.1 | McrB family protein | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46233.55 Da Isoelectric Point: 4.4503
>NTDB_id=1018861 ABXR98_RS04280 WP_374695168.1 928466..929761(+) (pilA) [Snodgrassella alvi strain Amel03]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKPEQADTAPVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKDALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKPEQADTAPVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKDALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1018861 ABXR98_RS04280 WP_374695168.1 928466..929761(+) (pilA) [Snodgrassella alvi strain Amel03]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGACCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCAGTGTTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGATGCTCTGTATGAATTAC
TGTTGCCGCTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAATTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTAGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCCGACACCGCTCCCGTTCAACCACAGACCGAAACAGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCAGTGTTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGCCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGATGCTCTGTATGAATTAC
TGTTGCCGCTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAATTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGCGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGACGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTAGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGGGCATTTGTAGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.453 |
100 |
0.657 |