Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABXR98_RS00290 Genome accession   NZ_CP160206
Coordinates   60691..61161 (+) Length   156 a.a.
NCBI ID   WP_084547443.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel03     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 55691..66161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR98_RS00270 (ABXR98_04710) - 56943..57290 (-) 348 WP_374694944.1 hypothetical protein -
  ABXR98_RS00275 (ABXR98_04705) - 57459..58772 (+) 1314 WP_374694945.1 replication-associated recombination protein A -
  ABXR98_RS00280 (ABXR98_04700) - 58759..59829 (+) 1071 WP_367446513.1 aldose epimerase family protein -
  ABXR98_RS00285 (ABXR98_04695) - 59987..60694 (+) 708 WP_084562610.1 phosphoglycolate phosphatase -
  ABXR98_RS00290 (ABXR98_16755) recX 60691..61161 (+) 471 WP_084547443.1 recombination regulator RecX Regulator
  ABXR98_RS00295 (ABXR98_04680) - 61310..62263 (-) 954 WP_198209555.1 bile acid:sodium symporter family protein -
  ABXR98_RS00300 (ABXR98_04675) rpsT 62296..62562 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABXR98_RS00305 (ABXR98_16760) - 62684..63811 (-) 1128 WP_374695261.1 AI-2E family transporter -
  ABXR98_RS00310 (ABXR98_04655) lpdA 64085..65836 (-) 1752 WP_374694946.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18185.64 Da        Isoelectric Point: 8.0793

>NTDB_id=1018849 ABXR98_RS00290 WP_084547443.1 60691..61161(+) (recX) [Snodgrassella alvi strain Amel03]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQINNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1018849 ABXR98_RS00290 WP_084547443.1 60691..61161(+) (recX) [Snodgrassella alvi strain Amel03]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCACTACTGGCACGGCGAGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTACTTACCGGACAGAGAACAACAGATAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGTCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment