Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BAMY6614_RS03035 Genome accession   NZ_CP006960
Coordinates   627487..628281 (-) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 622487..633281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS03015 (BAMY6614_03205) - 622593..624011 (-) 1419 WP_021494634.1 sensor histidine kinase -
  BAMY6614_RS03020 (BAMY6614_03210) - 624008..624691 (-) 684 WP_014419337.1 response regulator transcription factor -
  BAMY6614_RS03025 (BAMY6614_03215) - 624905..625816 (+) 912 WP_017418499.1 PepSY domain-containing protein -
  BAMY6614_RS03030 (BAMY6614_03230) htrA 626204..627400 (-) 1197 WP_053104180.1 S1C family serine protease Regulator
  BAMY6614_RS03035 (BAMY6614_03235) vicX 627487..628281 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  BAMY6614_RS03040 (BAMY6614_03240) - 628296..629135 (-) 840 WP_061861705.1 two-component system regulatory protein YycI -
  BAMY6614_RS03045 (BAMY6614_03245) yycH 629122..630480 (-) 1359 WP_014419341.1 two-component system activity regulator YycH -
  BAMY6614_RS03050 (BAMY6614_03250) walK 630470..632305 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  BAMY6614_RS03055 (BAMY6614_03255) walR 632312..633019 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=101884 BAMY6614_RS03035 WP_007407895.1 627487..628281(-) (vicX) [Bacillus amyloliquefaciens UMAF6614]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=101884 BAMY6614_RS03035 WP_007407895.1 627487..628281(-) (vicX) [Bacillus amyloliquefaciens UMAF6614]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCCCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment