Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | DQL23_RS06600 | Genome accession | NZ_LS483341 |
| Coordinates | 1364366..1365478 (+) | Length | 370 a.a. |
| NCBI ID | WP_045773332.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC7865 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1359366..1370478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL23_RS06575 (NCTC7865_01332) | - | 1360160..1360891 (+) | 732 | WP_060553515.1 | polyphosphate polymerase domain-containing protein | - |
| DQL23_RS06580 (NCTC7865_01333) | - | 1360902..1361584 (+) | 683 | Protein_1293 | DUF4956 domain-containing protein | - |
| DQL23_RS06585 (NCTC7865_01334) | rpsU | 1361711..1361887 (+) | 177 | WP_000048054.1 | 30S ribosomal protein S21 | - |
| DQL23_RS06590 (NCTC7865_01335) | mscL | 1361996..1362376 (-) | 381 | WP_045503293.1 | large conductance mechanosensitive channel protein MscL | - |
| DQL23_RS06595 (NCTC7865_01336) | dnaG | 1362582..1364363 (+) | 1782 | WP_282954018.1 | DNA primase | - |
| DQL23_RS06600 (NCTC7865_01337) | rpoS | 1364366..1365478 (+) | 1113 | WP_045773332.1 | RNA polymerase sigma factor RpoD | Regulator |
| DQL23_RS06605 (NCTC7865_01338) | - | 1365531..1365869 (+) | 339 | WP_045503289.1 | metal-sulfur cluster assembly factor | - |
| DQL23_RS06615 (NCTC7865_01338) | - | 1366341..1366428 (+) | 88 | WP_045503289.1 | tRNA-Ser | - |
| DQL23_RS06620 (NCTC7865_01341) | - | 1366643..1367023 (+) | 381 | WP_008809214.1 | CidA/LrgA family protein | - |
| DQL23_RS06625 (NCTC7865_01342) | - | 1367016..1367714 (+) | 699 | WP_060553517.1 | LrgB family protein | - |
| DQL23_RS06630 (NCTC7865_01343) | - | 1368152..1368721 (+) | 570 | WP_060553518.1 | TlpA family protein disulfide reductase | - |
| DQL23_RS06635 (NCTC7865_01344) | mnmE | 1368872..1370245 (-) | 1374 | WP_060553519.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42375.05 Da Isoelectric Point: 4.5140
>NTDB_id=1018790 DQL23_RS06600 WP_045773332.1 1364366..1365478(+) (rpoS) [Streptococcus gordonii strain NCTC7865]
MATKQKEVTTFDVQVAEFIRNHKKAGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
MATKQKEVTTFDVQVAEFIRNHKKAGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
Nucleotide
Download Length: 1113 bp
>NTDB_id=1018790 DQL23_RS06600 WP_045773332.1 1364366..1365478(+) (rpoS) [Streptococcus gordonii strain NCTC7865]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAATGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTTGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGTTTGGTAGTTTCTATTGCTAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACATA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGATCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACAATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTGGGTCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACTCCAGACAAGGTTCGTGAGATTCTCAAGATTGCTCAAGAGCCAGTTTCGCTAGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGTTAGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTTCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGCAAATTACGCCACCCAAGCCGTAGTAAGCCACTCCGTGATTTCATTGAAGATTAA
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAATGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTTGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGTTTGGTAGTTTCTATTGCTAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACATA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGATCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACAATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTGGGTCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACTCCAGACAAGGTTCGTGAGATTCTCAAGATTGCTCAAGAGCCAGTTTCGCTAGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGTTAGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTTCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGCAAATTACGCCACCCAAGCCGTAGTAAGCCACTCCGTGATTTCATTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.918 |
78.919 |
0.37 |