Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AB0E22_RS02865 | Genome accession | NZ_CP160191 |
| Coordinates | 556986..557960 (+) | Length | 324 a.a. |
| NCBI ID | WP_065354203.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain 39-045 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 551986..562960
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0E22_RS02830 (AB0E22_02830) | rpmG | 552370..552534 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| AB0E22_RS02835 (AB0E22_02835) | - | 552686..553225 (+) | 540 | WP_070407414.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| AB0E22_RS02840 (AB0E22_02840) | - | 553244..554683 (+) | 1440 | WP_275307174.1 | rhomboid family intramembrane serine protease | - |
| AB0E22_RS02845 (AB0E22_02845) | - | 554685..554888 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| AB0E22_RS02850 (AB0E22_02850) | - | 554885..555871 (+) | 987 | WP_014613817.1 | ROK family glucokinase | - |
| AB0E22_RS02855 (AB0E22_02855) | - | 555872..556183 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| AB0E22_RS02860 (AB0E22_02860) | - | 556196..556825 (+) | 630 | WP_096535719.1 | MBL fold metallo-hydrolase | - |
| AB0E22_RS02865 (AB0E22_02865) | comGA | 556986..557960 (+) | 975 | WP_065354203.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB0E22_RS02870 (AB0E22_02870) | comGB | 557929..558996 (+) | 1068 | WP_014613821.1 | competence type IV pilus assembly protein ComGB | - |
| AB0E22_RS02875 (AB0E22_02875) | comGC | 559009..559332 (+) | 324 | WP_015729165.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB0E22_RS02880 (AB0E22_02880) | comGD | 559310..559750 (+) | 441 | WP_014613823.1 | competence type IV pilus minor pilin ComGD | - |
| AB0E22_RS02885 (AB0E22_02885) | - | 559855..560055 (+) | 201 | WP_020219623.1 | hypothetical protein | - |
| AB0E22_RS02890 (AB0E22_02890) | - | 559961..560446 (+) | 486 | WP_369016983.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AB0E22_RS02895 (AB0E22_02895) | - | 560610..561137 (+) | 528 | WP_014613826.1 | shikimate kinase | - |
| AB0E22_RS02900 (AB0E22_02900) | gcvT | 561295..562386 (+) | 1092 | WP_015729161.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36904.61 Da Isoelectric Point: 7.2823
>NTDB_id=1018771 AB0E22_RS02865 WP_065354203.1 556986..557960(+) (comGA) [Staphylococcus pseudintermedius strain 39-045]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=1018771 AB0E22_RS02865 WP_065354203.1 556986..557960(+) (comGA) [Staphylococcus pseudintermedius strain 39-045]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.514 |
99.691 |
0.583 |
| comGA | Staphylococcus aureus N315 |
58.514 |
99.691 |
0.583 |