Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AB0E22_RS00670 Genome accession   NZ_CP160191
Coordinates   136521..137237 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 39-045     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 131521..142237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0E22_RS00650 (AB0E22_00650) - 131709..132794 (-) 1086 WP_131087456.1 YeeE/YedE family protein -
  AB0E22_RS00655 (AB0E22_00655) - 133026..133973 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  AB0E22_RS00660 (AB0E22_00660) - 134029..135513 (+) 1485 WP_131087457.1 sucrose-6-phosphate hydrolase -
  AB0E22_RS00665 (AB0E22_00665) - 135517..136461 (+) 945 WP_014613410.1 carbohydrate kinase -
  AB0E22_RS00670 (AB0E22_00670) agrA 136521..137237 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  AB0E22_RS00675 (AB0E22_00675) agrC 137251..138543 (-) 1293 WP_369016967.1 quorum-sensing sensor histidine kinase AgrC -
  AB0E22_RS00680 (AB0E22_00680) agrD 138567..138704 (-) 138 WP_014613413.1 cyclic lactone autoinducer peptide AgrD -
  AB0E22_RS00685 (AB0E22_00685) - 138706..139272 (-) 567 WP_369016968.1 accessory gene regulator AgrB -
  AB0E22_RS00690 (AB0E22_00690) - 139664..139744 (+) 81 WP_367884996.1 delta-lysin family phenol-soluble modulin -
  AB0E22_RS00695 (AB0E22_00695) - 140029..140832 (-) 804 WP_369016969.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=1018760 AB0E22_RS00670 WP_037542586.1 136521..137237(-) (agrA) [Staphylococcus pseudintermedius strain 39-045]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1018760 AB0E22_RS00670 WP_037542586.1 136521..137237(-) (agrA) [Staphylococcus pseudintermedius strain 39-045]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836

Multiple sequence alignment