Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAMY6614_RS01380 Genome accession   NZ_CP006960
Coordinates   288608..289738 (-) Length   376 a.a.
NCBI ID   WP_017418744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 283608..294738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS01350 (BAMY6614_01445) - 284450..284854 (-) 405 WP_014419089.1 Rrf2 family transcriptional regulator -
  BAMY6614_RS01355 (BAMY6614_01450) ureC 284996..286705 (-) 1710 WP_061861618.1 urease subunit alpha -
  BAMY6614_RS01360 (BAMY6614_01455) ureB 286702..287076 (-) 375 WP_061861619.1 urease subunit beta -
  BAMY6614_RS01365 (BAMY6614_01460) ureA 287073..287390 (-) 318 WP_014419091.1 urease subunit gamma -
  BAMY6614_RS01370 (BAMY6614_01465) - 287744..287932 (-) 189 WP_015418407.1 CsbD family protein -
  BAMY6614_RS01375 (BAMY6614_01470) - 288007..288486 (-) 480 WP_007407583.1 hypothetical protein -
  BAMY6614_RS01380 (BAMY6614_01475) rapC 288608..289738 (-) 1131 WP_017418744.1 tetratricopeptide repeat protein Regulator
  BAMY6614_RS01385 (BAMY6614_01480) moaA 289929..290954 (-) 1026 WP_014419094.1 GTP 3',8-cyclase MoaA -
  BAMY6614_RS01390 (BAMY6614_01485) fdhD 290972..291760 (-) 789 WP_014419095.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BAMY6614_RS20190 (BAMY6614_01490) - 291855..292019 (-) 165 WP_007407587.1 hypothetical protein -
  BAMY6614_RS01395 (BAMY6614_01495) - 292105..292785 (-) 681 WP_012118657.1 VWA domain-containing protein -
  BAMY6614_RS01400 (BAMY6614_01505) - 293095..293781 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44861.96 Da        Isoelectric Point: 5.4375

>NTDB_id=101874 BAMY6614_RS01380 WP_017418744.1 288608..289738(-) (rapC) [Bacillus amyloliquefaciens UMAF6614]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAIYTSGHGQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=101874 BAMY6614_RS01380 WP_017418744.1 288608..289738(-) (rapC) [Bacillus amyloliquefaciens UMAF6614]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCCTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCACTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGGACA
TGGGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(192-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399

Multiple sequence alignment