Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQL23_RS00145 Genome accession   NZ_LS483341
Coordinates   31317..32099 (+) Length   260 a.a.
NCBI ID   WP_011999584.1    Uniprot ID   A8AU93
Organism   Streptococcus gordonii strain NCTC7865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26317..37099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS00125 (NCTC7865_00025) rplI 27905..28357 (+) 453 WP_060553282.1 50S ribosomal protein L9 -
  DQL23_RS00130 (NCTC7865_00026) dnaB 28380..29735 (+) 1356 WP_060553281.1 replicative DNA helicase -
  DQL23_RS00135 (NCTC7865_00027) - 29737..30027 (+) 291 WP_011999582.1 Veg family protein -
  DQL23_RS00140 (NCTC7865_00028) - 30152..31339 (+) 1188 WP_060553280.1 pyridoxal phosphate-dependent aminotransferase -
  DQL23_RS00145 (NCTC7865_00029) recO 31317..32099 (+) 783 WP_011999584.1 DNA repair protein RecO Machinery gene
  DQL23_RS00150 (NCTC7865_00030) plsX 32096..33097 (+) 1002 WP_048777300.1 phosphate acyltransferase PlsX -
  DQL23_RS00155 (NCTC7865_00031) - 33094..33333 (+) 240 WP_060553279.1 acyl carrier protein -
  DQL23_RS00160 (NCTC7865_00032) purC 33484..34191 (+) 708 WP_060553278.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29997.34 Da        Isoelectric Point: 5.1631

>NTDB_id=1018725 DQL23_RS00145 WP_011999584.1 31317..32099(+) (recO) [Streptococcus gordonii strain NCTC7865]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFSGVLCPDHYREDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1018725 DQL23_RS00145 WP_011999584.1 31317..32099(+) (recO) [Streptococcus gordonii strain NCTC7865]
ATGATGCAGTCCATCACGAGTAAAGCGCTAGTACTCTATAATCGAAACTTTCGTGAAGATGACAAATTAGTAAAAATATT
TACAGAACAGGCTGGCAAGCGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATTTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAGGATTACCAAGATGTCCAGCCTTTCACT
CGGATTAATAGTGATTTGTTCATCATGGCCTATGCGACCTATGTCGCTGCCTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGACGCTGCTCTTTTTGCTTTTCTGACAAAAACCTTGGAGCTAATGGAAGAAGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCACGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAGTGGTGTCCTCTGTCCGGATCACTATCGTGAGGACGATCGTCGCTGCCATCT
CCACCCCAATATACCATTTTTACTTGATCAATTTCAGGCAGTGGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAGCAACAACTACGCGAATTTATAGATCAAATTTACGACGATTATGTTGGGATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTAGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(2-79)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AU93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.118

98.077

0.727