Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   DQL34_RS10320 Genome accession   NZ_LS483339
Coordinates   1946897..1947190 (-) Length   97 a.a.
NCBI ID   WP_100262274.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1941897..1952190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS10285 (NCTC12958_02174) - 1942300..1942743 (-) 444 WP_011681680.1 hypothetical protein -
  DQL34_RS12285 (NCTC12958_02175) - 1942817..1943242 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  DQL34_RS10295 (NCTC12958_02176) - 1943485..1943682 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  DQL34_RS10300 (NCTC12958_02177) - 1943931..1945124 (-) 1194 WP_084826168.1 acetate kinase -
  DQL34_RS10305 (NCTC12958_02178) comGH 1945180..1946136 (-) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  DQL34_RS10310 (NCTC12958_02179) comGG 1946181..1946498 (-) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQL34_RS10315 (NCTC12958_02180) comGF 1946476..1946913 (-) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL34_RS10320 (NCTC12958_02181) comGE 1946897..1947190 (-) 294 WP_100262274.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQL34_RS10325 (NCTC12958_02182) comGD 1947162..1947590 (-) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL34_RS10330 (NCTC12958_02183) comGC 1947550..1947876 (-) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL34_RS10335 (NCTC12958_02184) comGB 1947873..1948973 (-) 1101 WP_133264040.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL34_RS10340 (NCTC12958_02185) comGA 1948855..1949796 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL34_RS10345 (NCTC12958_02186) - 1949877..1950239 (-) 363 WP_111679734.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10886.82 Da        Isoelectric Point: 10.4561

>NTDB_id=1018616 DQL34_RS10320 WP_100262274.1 1946897..1947190(-) (comGE) [Streptococcus thermophilus strain NCTC12958]
MVNIKRRSLRGYILIESLIAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMVVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1018616 DQL34_RS10320 WP_100262274.1 1946897..1947190(-) (comGE) [Streptococcus thermophilus strain NCTC12958]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGCCTGATAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGTAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.237

100

0.412
  comGE Streptococcus mutans UA159

41.237

100

0.412
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361