Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DQL34_RS05970 Genome accession   NZ_LS483339
Coordinates   1108298..1109368 (-) Length   356 a.a.
NCBI ID   WP_100262476.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103298..1114368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS05955 (NCTC12958_01238) pstB 1104034..1104792 (+) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -
  DQL34_RS05960 (NCTC12958_01239) phoU 1104820..1105473 (+) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  DQL34_RS05965 (NCTC12958_01240) - 1105607..1108147 (+) 2541 WP_100273638.1 M1 family metallopeptidase -
  DQL34_RS05970 (NCTC12958_01241) xerS 1108298..1109368 (-) 1071 WP_100262476.1 tyrosine recombinase XerS Machinery gene
  DQL34_RS05975 (NCTC12958_01242) - 1109593..1110582 (-) 990 WP_111679598.1 lipoate--protein ligase -
  DQL34_RS11975 (NCTC12958_01244) - 1111020..1111298 (+) 279 WP_227972278.1 hypothetical protein -
  DQL34_RS05985 (NCTC12958_01245) - 1111410..1111850 (+) 441 WP_223899653.1 hypothetical protein -
  DQL34_RS05990 (NCTC12958_01246) glgP 1111956..1114220 (-) 2265 WP_014608303.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41501.63 Da        Isoelectric Point: 9.6822

>NTDB_id=1018568 DQL34_RS05970 WP_100262476.1 1108298..1109368(-) (xerS) [Streptococcus thermophilus strain NCTC12958]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLAVPYSFTTLYEYLKEYKRFFNWLIDSGISDTDDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1018568 DQL34_RS05970 WP_100262476.1 1108298..1109368(-) (xerS) [Streptococcus thermophilus strain NCTC12958]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTAGCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATACTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACTATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCA
GTTAATGTGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829