Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQL34_RS02640 Genome accession   NZ_LS483339
Coordinates   491611..493416 (+) Length   601 a.a.
NCBI ID   WP_111679293.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 486611..498416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS02625 (NCTC12958_00550) - 488451..489347 (-) 897 WP_111679291.1 LysR family transcriptional regulator -
  DQL34_RS02635 (NCTC12958_00551) coiA 490641..491600 (+) 960 WP_011680817.1 competence protein CoiA Machinery gene
  DQL34_RS02640 (NCTC12958_00552) pepF 491611..493416 (+) 1806 WP_111679293.1 oligoendopeptidase F Regulator
  DQL34_RS02645 (NCTC12958_00553) - 493598..494305 (+) 708 WP_024704213.1 O-methyltransferase -
  DQL34_RS02650 (NCTC12958_00554) - 494367..495509 (+) 1143 WP_111679295.1 peptidyl-prolyl cis-trans isomerase -
  DQL34_RS02655 (NCTC12958_00555) - 495636..495827 (+) 192 WP_111679297.1 hypothetical protein -
  DQL34_RS02660 (NCTC12958_00556) - 495827..496720 (+) 894 WP_111679299.1 replication initiator protein A -
  DQL34_RS02665 (NCTC12958_00557) - 497004..497342 (+) 339 WP_111679301.1 hypothetical protein -
  DQL34_RS12450 - 497459..497668 (+) 210 WP_308443140.1 YdbC family protein -
  DQL34_RS02675 (NCTC12958_00559) - 497673..497900 (+) 228 WP_111679305.1 hypothetical protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69182.40 Da        Isoelectric Point: 4.6082

>NTDB_id=1018548 DQL34_RS02640 WP_111679293.1 491611..493416(+) (pepF) [Streptococcus thermophilus strain NCTC12958]
MSDNRCHLEEKYTWDLTTIFATDADWETEYESIVQDLKKASSFAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYNAKASNLYSQLSEAFAYFEPEFMALESEKLVSFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFITLMESKNREVRKGAYEAMYRTYEQFQHTYAQTLQGVVKVH
NYMAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLELDKLKMYDVYAPLSETETALTYEEALK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVNDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGNEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1018548 DQL34_RS02640 WP_111679293.1 491611..493416(+) (pepF) [Streptococcus thermophilus strain NCTC12958]
ATGTCAGACAATCGTTGTCATTTAGAAGAAAAATATACATGGGATTTGACCACCATTTTTGCGACAGACGCTGATTGGGA
GACTGAATATGAAAGCATTGTTCAGGATTTGAAGAAGGCTAGTTCCTTTGCTGGTCACCTCTTGGACTCAGCCAAGAATT
TGCTTGAAGCAACAGAACTTTATATGAGTTTGATGCGTCGTTTGGAAAAAATCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAGTACAATGCCAAAGCCTCAAACCTATACTCACAGTTGAGTGAAGCCTTTGC
CTACTTTGAGCCTGAGTTTATGGCTTTGGAATCTGAAAAATTAGTATCCTTCAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAAGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAGCAGCT
GGTGATATTTTTAACGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTTCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGAATCGTGAAGTCCGTAAGGGAG
CCTATGAAGCTATGTATAGAACTTATGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTCAAGGTTCAC
AATTATATGGCTAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
CGACTCACTCTTAGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTGTTGGAAC
TTGATAAGCTTAAGATGTATGATGTTTATGCACCACTTTCTGAGACAGAGACTGCTCTTACTTATGAAGAAGCCCTCAAG
AAAGCAGAGGAAGTCTTGGCTATCTTTGGTGAGGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
TGTCCACCCTAACAAAGGGAAACGTTCAGGTGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACA
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCTGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAACGATGATAAGACACGTTTTGCTATCCTTAACCACTATTTAGATGGATTTAAGGGAACCGTCT
TCCGTCAAACGCAATTTGCCGAGTTTGAGCATGCTATCCATGAAGCGGATGCATCGGGTCAAATCTTGACAGCAGACTTC
ATGAATAAGCTTTATGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTATGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTTTATCAATATGCTACAGGATTTGCAGCAGCAAGCTACTTGGCAG
AAAAGATTGTTCACGGTAATGAAGAAGATAAAGAAGCTTACCTTACGTACCTTAAGGCAGGTAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGACATGACCAACACTGACTACTTGGATGCAGCTTTCAAGGTTTTCGAAGACCGCTT
AGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCATCTTTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

96.173

100

0.962